Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24560 672 / 0 unknown protein AT3G49055 82 / 5e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025844 [exp] 1162 / 0 AT1G24560 750 / 0.0 unknown protein Lus10013022 [exp] 619 / 0 AT1G24560 624 / 0.0 unknown protein Lus10029143 [exp] 610 / 0 AT1G24560 613 / 0.0 unknown protein Lus10027489 [exp] 107 / 3e-24 AT3G49055 244 / 3e-75 unknown protein Lus10039244 [exp] 59 / 3e-10 AT3G49055 89 / 2e-21 unknown protein Lus10007123 [exp] 57 / 3e-10 AT1G24560 52 / 9e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G183800 [exp] 823 / 0 AT1G24560 691 / 0.0 unknown protein Potri.010G049400 [exp] 801 / 0 AT1G24560 642 / 0.0 unknown protein Potri.008G184600 [exp] 365 / 2e-121 AT1G24560 302 / 2e-97 unknown protein Potri.015G146100 [exp] 124 / 1e-29 AT3G49055 191 / 1e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038257 pacid=23158336 polypeptide=Lus10038257 locus=Lus10038257.g ID=Lus10038257.BGIv1.0 annot-version=v1.0 ATGTCGGCGGTTGGTGGAGGCGAAGATACCGCCGACGCGGTGCTGAGCGACGTGGAGGAGGATGAAGATCCGAGTTCGATCGTGATTTCAAGTCCCAGCC AAGAAGATATCTCATTAGAAAGGTTTCGCGAGCTTGCCAGCGAGCTAGAGCGGGAGCGATTGCTTCGCCGGGCAGCCGAGGATTCGAAATCGGAGTTACA GGACAAGTTCCTCCGGTTGAAGTCTCTAGCGCATGAGGCTATCAAGAAGCGAGATGAATGTGGGAAGCAACGGGACCAAGCTGTTAAGGAGAAGGAGGAT GCTCTGCTGGCTAACGTTAAGATTACGGATGAATTGACTCAACTGAAAAAGTTGCAAGGTGAGGTTATAAAGCAGAGAGATGAGGTTGCTCGGCAATTTG ATGAAGCTGTTAAGACGAGGGATGGATTGCAATCGGAGATGGATAATTCCAGGCACATGCTGGTGAGTGGAATTGAAAAGATTTCCGGAAAAGTTAGTAA TTTTAAGAATTTTGCAGCAGCTGGATTGCCCAGATCTCAGAAATACTCTGGATTTCCTGCAATTGCGTACGGAGTAATTAAGAGGACCAATGAGATAGTC GAAGAGCTTGTTAGGCAGATTGATGCCACCGCAAAGTCCAGAAATGAAGCGAGAGAACAGATGGAACAGAGGAACTATGAGATAGCCATTGAAGTGTCTG AACTTGAAGCTTCCATTAGTAGATTGAAAGAAGAATTGGAGAAGAAGAGTTCATCGGTTGATAGTTTAGAGAAAGCCGTTGAAGAAAACCATGGAAAGTT GGCTGAAGTTGGGAGACAGATGGTTGAGAAGACGGAGATGGGGCAGAAGGAAGTTGCGGAAATGACGCTGTTAGTTAGTGAGTACGATGAGAAACTGAGG AAAGTGGAAATGGAGAGGGAGTCTTTGAGGCCTTTGTTGGTTGATCAATTGAATTTGATTGCCCGAGTCCATGATCAGCTTTATAGTGTTATTAAGATAG TTAATTCAAATCATTCTGATTCAGATTTGTCAGTGTCTTTGTTTCTCCCACAGCAGACAGATATGGAGGAGAATGTTCGTGCTTCACTTGCAGGCATGGA ATCAATTAACCAGTTAGCTAGAATAGTTGCAGAGAAAACAAAGGACTGGACAGATGAGAAAATGCATGAAGTGAAGAAGTTGAATGAAACTGTTGACCGA TCAAATAAAGAGAAAGAACAAATCAGTTCTTTACTCAGGAGTGCTTTGTCCAAAAGGATGACTTCAAACTCGGCTTCCAGGACAAATGAATTGTTTCAAG CTGCTGAGAATGGTTTGCGAGATTCTGGAATAGATTTCAAATTCAATAAGGTCCTTGCAGCTTCTCATGAAACTAATGGTCCGCAGAATGCAGATGAGGA TGAAATATACAATCTGGCTGGAGCACTGGAGAATATTGTCAAGGCATCCCAGCTTGAGATCATTGGATTGCAGCACTCTGTGGAGGGATTAAGGGCAGAG TCAAGTTTACTGAAGGAGCATATAGAGGGACAAGCAAAGGAATTGAACCACAGACTGCAGAAAATTGAGAAGCTTGAGGAGAAAGAGAGAGTAGCAAATG AAAGCGTTGAAGGGCTCATGATGGACATTGCTGCTGCTGAAGAAGAAATAACAAGGTGGAAAGTGGCAGCAGAGGATGAGGCTGCTGCAGGGAGAGCTGT TGAACAAGAGGTCATGGCTCAGTTGTCTGCATTAAAGCAAGAGCTTGAAGAGACAAGACAGTCTATGTCAGAATCGGAGAAGAAGTTGAAGTTTAAGGAG GAGACTGCAGCTGCTGCTATGGCTGCAAGAGAGGCTGCTGAGAAGTCATTGAGATTAGCTGACACAAGAGCTTCGAGGCTCAGAGACAGGGTAGAGGAGC TCACCCGTCAAATTGAAGAGTTTGAGACCCGAGAAGACACTAGAGGAAGAAATAGACCTAGATATGCATGCTGGCCATGGCAGTGGCTCGGGCTAGACAT TGTGGGCACAAGCAGACCTGAAATACAGCAACAAACTTCAAATGAAATGGAGCTGTCAGAGCCCTTTTTATGA
AA sequence Show only first row Show all	>Lus10038257 pacid=23158336 polypeptide=Lus10038257 locus=Lus10038257.g ID=Lus10038257.BGIv1.0 annot-version=v1.0 MSAVGGGEDTADAVLSDVEEDEDPSSIVISSPSQEDISLERFRELASELERERLLRRAAEDSKSELQDKFLRLKSLAHEAIKKRDECGKQRDQAVKEKED ALLANVKITDELTQLKKLQGEVIKQRDEVARQFDEAVKTRDGLQSEMDNSRHMLVSGIEKISGKVSNFKNFAAAGLPRSQKYSGFPAIAYGVIKRTNEIV EELVRQIDATAKSRNEAREQMEQRNYEIAIEVSELEASISRLKEELEKKSSSVDSLEKAVEENHGKLAEVGRQMVEKTEMGQKEVAEMTLLVSEYDEKLR KVEMERESLRPLLVDQLNLIARVHDQLYSVIKIVNSNHSDSDLSVSLFLPQQTDMEENVRASLAGMESINQLARIVAEKTKDWTDEKMHEVKKLNETVDR SNKEKEQISSLLRSALSKRMTSNSASRTNELFQAAENGLRDSGIDFKFNKVLAASHETNGPQNADEDEIYNLAGALENIVKASQLEIIGLQHSVEGLRAE SSLLKEHIEGQAKELNHRLQKIEKLEEKERVANESVEGLMMDIAAAEEEITRWKVAAEDEAAAGRAVEQEVMAQLSALKQELEETRQSMSESEKKLKFKE ETAAAAMAAREAAEKSLRLADTRASRLRDRVEELTRQIEEFETREDTRGRNRPRYACWPWQWLGLDIVGTSRPEIQQQTSNEMELSEPFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24560			unknown protein		Lus10038257 [exp]	0	1
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	1.0	0.8939
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10025824 [exp]	2.0	0.8550
AT5G53140			Protein phosphatase 2C family ...		Lus10039341 [exp]	2.4	0.8640
AT3G25585		AAPT2, ATAAPT2	aminoalcoholphosphotransferase...		Lus10034410 [exp]	2.6	0.8503
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	3.5	0.8833
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10000537 [exp]	3.9	0.8535
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023338 [exp]	4.9	0.8502
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10023920 [exp]	6.2	0.8322
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	8.4	0.8407
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	8.5	0.8521

Compare expression of checked genes

Lus10038257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.