Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50340 607 / 0 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases (.1) AT2G45280 43 / 0.0006 ATRAD51C RAS associated with diabetes protein 51C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025843 [exp] 1171 / 0 AT5G50340 553 / 0.0 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191200 [exp] 689 / 0 AT5G50340 645 / 0.0 ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06745 [flax] [poplar] ATPase KaiC CL0329 [flax] [poplar] S5 PF05362 [flax] [poplar] Lon_C Lon protease (S16) C-terminal proteolytic domain
Representative CDS sequence Show only first row Show all	>Lus10038258 pacid=23158244 polypeptide=Lus10038258 locus=Lus10038258.g ID=Lus10038258.BGIv1.0 annot-version=v1.0 ATGAACTGCTTGAGATCATATTTCTCTTCCAGAGGCATTCTCCGCAAGAGCCCAAGCAAATCTCCCAACTCTTTTCCTTTCATTTCAACCCAGTGCTCGC TTCCGTTTCCGTTTCTTCATTTTCGCTTCTCTACCAATCGCCTTTCAGCTGAAGACTCTCCTTTCGCGTTTGATTATTCTGAACGAAACCCTGGTAGCAG TAATGCTTCACGTGGCTCTCAGGTTCGTAGGGTTGTCGATCCAGCCAGGGGTGGGTTTGAGACGACAAAGAGCCCACTGGGCAGAAACAACCAGGAACCA GAATCTGGCTTTTCCAGCTTTCTTTCAGAAATGGAGGAGATGGAGAGAAATAGGACATATGGAGGTGCCAAGGGAGGTAATTTGGGCGATAGCTTTGATG AAAAAAAGTATGAAGACGATGATGTTAATGGCGCAAACTATGAGAGTTCTGTCAATATAGATTGTAAACCAGATGGTTTGTCGAGCTCAGTTGATGAGCA GCAGAAGAATCGAAGTGGTAGCGTGAATAAGGAAAATCCGAGTACGAAAGATAAGTCGAGGATGGGGCTTCCTGTATATATTGATGACAGTAAGGGCGTT GAGAATGTGAAAAAATATGGAAATGAAAAGAAGGTGGGTTCTGCAAAAGGAGTGAAGCCAGGAATAGGATATACGGTGACAAATAATAAGAAGGAGAAGA CCAAAACTAGTTATGTTTGTGAGAACTGTGGGTATTCAGACGGGCAATGGTGGGGAACTTGTCGCTCTTGTAAGAAGTATGGGACGATGAAGAAGTTTAC TGAAGCGGGTGGTGGAAGTGGGGGGAAAGTTAGTGGCACGGTGACCTCTGAGAATATTGTGCAGTCTTGGCTACCGCAGCAACCTGCAGAGGTTAACCCA GTAAGTTTGGCTGACGTCAACAGGGAGGTGAATCATTTGGAATGGAGAATTCCCCTGCTTGGGGCTTTTGGAGATGAAGTAGCTAGAGTTCTTGGTGGTG GTATTGTACCAGGTTCTCTGGTCTTGGTTGGTGGAGATCCTGGTGTTGGAAAGAGTACATTGATGTTACAGCTTGCTTCAATAATAGCTGAAGGACAAGG TCTTGGGAAAACAGCTCCGGTTGTTTATGTCTCCGGGGAAGAGAGTGTTCAGCAAATTGGGAACAGAGCTGTTCGTCTGGGAATAGGGATAGAAGACCTT TACTTGTACTCAAGCACTGATGTTGCGGACATAATTGTAAAAACTCGGAACATATCTCCTCGTGCTTTAGTTGTTGATTCAATTCAAACAGTTTACCTTG ACGGCTATGGGAGTCCTGGAGGAATACAACAGTGGTTGAGCTTGACGCCAGCCTCTAGGATTCTGCTGTTGGATGGTAGACCTTCGGAATCCCATAAGGG TTATGTCAAGGAATGCACAGCAGCCTTGTTGCGTTTTGCAAAGAAATCTGGCATTCCTGTTCTGTTGATCGGACATGTGACCAAGTCTGGGGACATTGCT GGGCCTCGTGTCCTGGAGCATATTGTTGATGTTGTTTTATATTTGGAAGGGGAGAAGTCCTTGTCTCATCGTTTGCTCCGGCCAGTGAAGAACCGGTTTG GGTCCACTGATGAGCTGGGCGTATTTGAAATGGTTCAATCGGGTTTGAAAGTTGTTTCCAATCCAAGTGAGATATTCTTAAGTCAGCAGCACTTGGAATC TGATGTTGTGGCTGGAGTAGCTGTGACTGTAATGATGGATGGGTGTCGAAGTTTCCTTGTTGAGATTCAGGCATTGTGCATTGCTAATTCGTTAGTTTCA AGGAAGCACGCTACTACTGGAATTAAACTGGGCAGGGCTGAAATGATTATTGCCGTGCTTATGAAGCAAGCTGGGTTGCCACTTGATGAGAATATTATAT TCCTCAATGTTCTTGGTGGGGCCGAGTTGACTGAAACGGCTGGTGATCTTGCAATAGCAGTTGCAATTTGCACCAGTTTCTTGGAGTGCCCGATTCCCAA CAACATTGCATTTATTGGAGAAATTGGTCTTGGTGGTGAGCTGCGCACAGTACCCAGAATGGAGAAGCGAGTACAGACAGTTGCAAAGTTGGGATACCAG ACGTGCATTGTTCCAGCTGCTGCCAAAAAAGCTCTGGAAAATTTTAGCTACGAGGGGCTGCAAGTGGTGGGATGCGAGAATCTGAAAGAAGTCATCAACA CAGTCTTCAGACCAGGTGGCAGATGA
AA sequence Show only first row Show all	>Lus10038258 pacid=23158244 polypeptide=Lus10038258 locus=Lus10038258.g ID=Lus10038258.BGIv1.0 annot-version=v1.0 MNCLRSYFSSRGILRKSPSKSPNSFPFISTQCSLPFPFLHFRFSTNRLSAEDSPFAFDYSERNPGSSNASRGSQVRRVVDPARGGFETTKSPLGRNNQEP ESGFSSFLSEMEEMERNRTYGGAKGGNLGDSFDEKKYEDDDVNGANYESSVNIDCKPDGLSSSVDEQQKNRSGSVNKENPSTKDKSRMGLPVYIDDSKGV ENVKKYGNEKKVGSAKGVKPGIGYTVTNNKKEKTKTSYVCENCGYSDGQWWGTCRSCKKYGTMKKFTEAGGGSGGKVSGTVTSENIVQSWLPQQPAEVNP VSLADVNREVNHLEWRIPLLGAFGDEVARVLGGGIVPGSLVLVGGDPGVGKSTLMLQLASIIAEGQGLGKTAPVVYVSGEESVQQIGNRAVRLGIGIEDL YLYSSTDVADIIVKTRNISPRALVVDSIQTVYLDGYGSPGGIQQWLSLTPASRILLLDGRPSESHKGYVKECTAALLRFAKKSGIPVLLIGHVTKSGDIA GPRVLEHIVDVVLYLEGEKSLSHRLLRPVKNRFGSTDELGVFEMVQSGLKVVSNPSEIFLSQQHLESDVVAGVAVTVMMDGCRSFLVEIQALCIANSLVS RKHATTGIKLGRAEMIIAVLMKQAGLPLDENIIFLNVLGGAELTETAGDLAIAVAICTSFLECPIPNNIAFIGEIGLGGELRTVPRMEKRVQTVAKLGYQ TCIVPAAAKKALENFSYEGLQVVGCENLKEVINTVFRPGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50340			ATP-dependent peptidases;nucle...		Lus10038258 [exp]	0	1
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	2.8	0.8375
					Lus10010342 [exp]	9.6	0.7876
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	10.7	0.7704
AT2G03667			Asparagine synthase family pro...		Lus10026669 [exp]	10.9	0.7492
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	15.2	0.7341
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	18.5	0.7602
AT5G44090			Calcium-binding EF-hand family...		Lus10024917 [exp]	23.0	0.7200
					Lus10036475 [exp]	23.7	0.7451
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	27.7	0.7782
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	31.0	0.7131

Compare expression of checked genes

Lus10038258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.