Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62940 702 / 0 ACOS5 acyl-CoA synthetase 5 (.1) AT3G21240 317 / 2e-101 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 304 / 2e-96 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT4G05160 304 / 2e-96 AMP-dependent synthetase and ligase family protein (.1) AT1G65060 289 / 1e-90 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G20510 285 / 3e-89 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 284 / 1e-88 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 278 / 4e-86 4CL5 4-coumarate:CoA ligase 5 (.1) AT5G63380 254 / 3e-77 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 243 / 7e-73 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025842 [exp] 926 / 0 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1) Lus10005390 [exp] 326 / 6e-105 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10024123 [exp] 319 / 3e-102 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10008677 [exp] 315 / 1e-100 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10026143 [exp] 313 / 4e-100 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10016135 [exp] 286 / 2e-89 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 286 / 2e-89 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 285 / 1e-88 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 285 / 6e-87 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G055700 [exp] 743 / 0 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.001G036900 [exp] 342 / 3e-111 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G172651 [exp] 316 / 2e-103 AT1G62940 324 / 4e-107 acyl-CoA synthetase 5 (.1) Potri.003G188500 [exp] 314 / 2e-100 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 310 / 1e-98 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 302 / 1e-95 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.002G012800 [exp] 295 / 7e-93 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 294 / 2e-92 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.019G049500 [exp] 291 / 3e-91 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.017G112800 [exp] 280 / 2e-87 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10038259 pacid=23158129 polypeptide=Lus10038259 locus=Lus10038259.g ID=Lus10038259.BGIv1.0 annot-version=v1.0 ATGGACAGTACCAAATATGAAGAGGACGATCAACACATCTTTAGAAGCCAATACCCGGCAATCCCCGTCCCCAAGAACATGACCCTGCCCGAATTCGTCC TCCAAGATGCCGATCTGTACGCCGAAAAGATGGCATTCGTCGATGCATTCACCGGCAGGTCCTATACATATGCCGACGTTGTTAGGGACACTAGAAGGTT TGCAAAAGCTCTAAGGTCCCTCGGCCTGAGGAAGAAGCATGTGGTGGTTGTTGTGCTCCCTAATGTTGTCGAGTATGCAATTGTTGCGCTCGGAATAATG GCTGCCGGGGGAGTCTTCTCCGGTGTCAATCCCGCATCGCATCCTTCTGAGATCAAGAAGCAAGTTGAGGCTGCCGATGCCAAGCTCATTGTCACCAACG ATGTCAACTATGAGAAGGTGAATACTCTCCAGCTACCTGTGATCGTCCTGTCAGACACCAAACTGGACGGTCCCATCAACTGGAACGACCTCCTCACAGC CGCCGACCGGGCCACCGACAACGATATCCGCCGCCAGGATGCGGTGGAGCAAGACGACATATGCGCCCTCCCATTCTCGTCAGGCACGACGGGGACGTCG AAGGGAGTGATGCTGTCCCACAGGAACATCGTGGCCAACCTCTGCTCATCACTGTTCAGCGTGGGTCCCGAGCTGATCGGCCAGGTCACCACTCTGGGGC TCATACCTTTCTTCCACATCTACGGGATCACCGGAATATGCTGCGCCACGCTGAAGAACAAGGGCAAAGTGGTGGTTATGGGCAGGTACGATCTCAGGAC TTTTCTCAACGCCCTCATTGCTCACGAGGTCACGTTCGCTCCCATCGTCCCGCCCATCATACTGGCGTTGGTGAAGAACCCGATTGTCGAGGAGTTTGAC ATGGGGAAGCTGAACCTGGCAGCTGTTATGACCGCCGCCGCCCCTCTGGCGCCGGAGCTGCTCCGAGCGTTTGAGAGTAAGTTCCCTGGTGTTCAAGTCC AGGAGGCGTATGGGTTGACGGAGCACAGTTGCATAACACTATCGCACGGGAATCCATGGAAAGGACAGAGGATTTCGAAGAAGAACTCGGCGGGATTCAT ATTGCCAAACGTGGAGGTGAAGTTCATCGATCCTGAAACAGGGGCATCTCTCCCGGCCAACACTCCCGGGGAAATTTGTGTGAGAAGCAAGTGTGTGATG ATGGAGGAGACAGCAAGGACCATTGACAAGGCAGGATGGCTGCACACTGGGGACATTGGTTATATTGATGATGATGGAGATATCTTCATCGTGGACCGCA TCAAAGAACTCATCAAATACAAAGGCTTTCAAGTTGCTCCGGCGCAACTGGAGGCTATTCTGCTATCCCATCCAGCAGTGCATGATGCAGCAGTTGTGCC GTTGGCGGATGAAGAGGCAGGGGAGGTGCCAGGGGCATGTGTGGTGGTGAAGGGTAAAGAAATAGCAAGTGAGGAAGAGATAATGAAGTTTGTGGCAGGG AATGTGGCTCATTACAAGAGAGTTAGAGTGGTTCAGTTTGTGGATAGCATCCCCAAATCCCCTTCTGGCAAAATCATGCGCAGGTTTATTAAGGACCAAA TGATCCAAAGGATTCGTTCTGCTGCATCCAACAACTCATCAACTCCTCCGACTCCTCTTCCTCTCCACAACCACTCTCCCAATTAA
AA sequence Show only first row Show all	>Lus10038259 pacid=23158129 polypeptide=Lus10038259 locus=Lus10038259.g ID=Lus10038259.BGIv1.0 annot-version=v1.0 MDSTKYEEDDQHIFRSQYPAIPVPKNMTLPEFVLQDADLYAEKMAFVDAFTGRSYTYADVVRDTRRFAKALRSLGLRKKHVVVVVLPNVVEYAIVALGIM AAGGVFSGVNPASHPSEIKKQVEAADAKLIVTNDVNYEKVNTLQLPVIVLSDTKLDGPINWNDLLTAADRATDNDIRRQDAVEQDDICALPFSSGTTGTS KGVMLSHRNIVANLCSSLFSVGPELIGQVTTLGLIPFFHIYGITGICCATLKNKGKVVVMGRYDLRTFLNALIAHEVTFAPIVPPIILALVKNPIVEEFD MGKLNLAAVMTAAAPLAPELLRAFESKFPGVQVQEAYGLTEHSCITLSHGNPWKGQRISKKNSAGFILPNVEVKFIDPETGASLPANTPGEICVRSKCVM MEETARTIDKAGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAQLEAILLSHPAVHDAAVVPLADEEAGEVPGACVVVKGKEIASEEEIMKFVAG NVAHYKRVRVVQFVDSIPKSPSGKIMRRFIKDQMIQRIRSAASNNSSTPPTPLPLHNHSPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10038259 [exp]	0	1
AT4G10000			Thioredoxin family protein (.1...		Lus10001283 [exp]	5.4	0.7917
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	12.5	0.7880
AT3G16190			Isochorismatase family protein...		Lus10037581 [exp]	14.5	0.7780
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10028605 [exp]	18.2	0.7471
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	19.9	0.7719
AT3G27100			unknown protein		Lus10012534 [exp]	20.5	0.7647
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011012 [exp]	24.9	0.7518
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	27.2	0.7669
AT5G45360			F-box family protein (.1)		Lus10007767 [exp]	29.7	0.7306
AT5G47435			formyltetrahydrofolate deformy...		Lus10028958 [exp]	33.9	0.7571

Compare expression of checked genes

Lus10038259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.