Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30200 551 / 0 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT5G57380 323 / 4e-101 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT2G18880 238 / 5e-70 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT3G24440 173 / 5e-46 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT2G18870 93 / 6e-21 VIL4, VEL3 VIN3-like 4, vernalization5/VIN3-like 3, vernalization5/VIN3-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025841 [exp] 1139 / 0 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10019393 [exp] 216 / 1e-61 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019394 [exp] 213 / 6e-60 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 206 / 1e-58 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10028170 [exp] 205 / 3e-58 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10043251 [exp] 185 / 4e-50 AT3G24440 432 / 8e-145 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043250 [exp] 134 / 8e-34 AT3G24440 226 / 3e-68 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10040339 [exp] 71 / 9e-15 AT4G30200 49 / 9e-08 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10004179 [exp] 65 / 6e-12 AT4G30200 46 / 3e-06 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091500 [exp] 738 / 0 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G167800 [exp] 737 / 0 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G076500 [exp] 228 / 1e-64 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G158676 [exp] 223 / 6e-63 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.002G111600 [exp] 212 / 2e-60 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF00041 [flax] [poplar] fn3 Fibronectin type III domain CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10038260 pacid=23158118 polypeptide=Lus10038260 locus=Lus10038260.g ID=Lus10038260.BGIv1.0 annot-version=v1.0 ATGGATTTATCGAATTACTGGAAATTGAGCATGAAAGAGAAGACGAAGCTAGTCTACGAGCTGTCCGATCAACCGGATGCTGCGGAAATGCTCCAGGCGT GGAGTCGGCAGGACATTCTTCAGATCCTGTGCTCCGAGATGGGGAAAGAGAGGAAATACACCGGCCTCACCAAGCTCAAGATTATCGAGCAGCTATTGAG GATCGTTCACGATAAGAAATCCTCCGCCGATGCTGGCGGCGGCGGCGGGGGGGGGGCGCGGGGGTGTTGGGCGTTCTTCTTCCACAATGTAAGCATATAC AAGCAGAGGAAAATGGATGATTTCCCAACTCGGACTCCTCCTCTTCCTCCTGCTCCTACCTTTCCGTCGTCCAATACGGTTTACTGCAAGAACTCCGCCT GCAAAGCCACAATGAAACAGGACGATGCGTTTTGCAAGAGATGCTCTTGTTGTATATGTTGTAAGTACGACGATAACAAGGATCCCAGTCTATGGATGAC TTGCAGTGAGGACCCGCCATTTCAAGGCCCTGCTTGTGGTATGTCTTGCCATCTTGACTGTGCGTTGAAACATGAGGCTACTGGGATTGGGGAAGATGAC GGAGGACGTGAGAAACTTGATTGCAGCTTCCGGTGTGTCGGTTGTGGGAAAGTCAACGATTTGCTAGTGTTCTTGAGAAAGCAACTGATGATAGCAAAGG AAACGAGGCGAGTAGACATCCTTTGCTACCGACTGTCTGTAAGCCGGACACTTCTGAATGGGACAATGACGTATCAACAACTTCTTGAGATCGTGGATGA AGCTATAAAGCAGCTTGAAACTGAAGTGGGTCCCATCACTGGTTTGCCCGTGAAGATGGGCAGAGGTATTGTCAACAGGCTTTCGGTTGGCCCAGCGATC CAGAAGCAATGTGCGTCTGTTCTTGAGTCACTGGACAGCATCCTGTCAGCCCTCGTTTGTCCTCGTCCATCAGTAGATTCTGCTGCCCATGTTGGAGGTT CGAATTTGATGTCTCCAATCACAGTTAGATTTGAAGATGTAAGTGCAACAGCTATTACATTAGTTTTGAGGTCCGAAGATTCTTCTGCAGATACTATAAG TGGTTATAGTTTATGGCATCGTAAAGCCACGGATACAGGTTATTCTGCTGAACCAACCTGCAGACTGTTTCCCCCAAATACGAAGTACATTGTCACGGGT CTTCAACCAGCTACGGAGTACTCTTTTAAAGTTTCTTCTTTCAACAATAGGGGAGAAGTGGGTAGGCGTGAGTTGCATTATTCGACATGCGACATCAACG ATGAAGCTCAGATCTCCCCAGCAGGGGAGAGAAGTCAAAGTCCTGTAACCAATTGTAGCAGTTTTTCTAACCCATCGTCAGTGGAAGATGAGACTAATCA CAGTCTGCCAACTGCTGAGCAGATTGTTAACCGAGCTGACAACTATCTTACTTATGGAAAGGACGGTGAGAAACTTATGTCTGTCAACATGGCCGGTGTT GGTGCAACCTGCCCTGGGATTGGCATTGGAAAAAGTAGATCAGATGCTGTTACTCTATTAGATGGGGAACATGGTGTACCAAATTCTGATGTTGGAAAGC TGGAGACTAGTCATCCAAGCAAGGATTGTCAAATTGTAGAGAAAATGAGCACCGATAAATGCTCTGACGTACCTCTTCTGACTGGTGTGGGCAACTTGGA CGCTAGCTTACCCATTACTCCGTGCAAAGAGGAAATAGTGAAGGACGTTCAAGGAAGAAATGCAAGATTGAAACCCAGCTACAAGGATGCAACCGATGCA GCTGACAGAGGACGAGAACTCCAAGATGGCAGCACGTCCAAGTCAAAAAAGAGAAGTGCAGATGAGCAATGCACAGCAATTGGGAACCCTGATGAGGAGT TCGAGTATTGTGTGAAAATGATAAGGTGGTTAGAATGCCAAGGGCACATAGAGAAGAACTTTAGGCAGAAATTCCTGACATGGTACAGCTTGAGAGCAAG CACAGAAGAGATGAGGGTTGTCAAGGCATATGTAGATACATTCATTGAAGATCCATCAGCTCTTGCAGAACAGCTTGTTGATACATTTTCAGAATGCATT TCTTCTAGCAGGAGATCTTCTGCGGTGCCAGCTGGGTTTTGCATGAAACTTTGGCATTGA
AA sequence Show only first row Show all	>Lus10038260 pacid=23158118 polypeptide=Lus10038260 locus=Lus10038260.g ID=Lus10038260.BGIv1.0 annot-version=v1.0 MDLSNYWKLSMKEKTKLVYELSDQPDAAEMLQAWSRQDILQILCSEMGKERKYTGLTKLKIIEQLLRIVHDKKSSADAGGGGGGGARGCWAFFFHNVSIY KQRKMDDFPTRTPPLPPAPTFPSSNTVYCKNSACKATMKQDDAFCKRCSCCICCKYDDNKDPSLWMTCSEDPPFQGPACGMSCHLDCALKHEATGIGEDD GGREKLDCSFRCVGCGKVNDLLVFLRKQLMIAKETRRVDILCYRLSVSRTLLNGTMTYQQLLEIVDEAIKQLETEVGPITGLPVKMGRGIVNRLSVGPAI QKQCASVLESLDSILSALVCPRPSVDSAAHVGGSNLMSPITVRFEDVSATAITLVLRSEDSSADTISGYSLWHRKATDTGYSAEPTCRLFPPNTKYIVTG LQPATEYSFKVSSFNNRGEVGRRELHYSTCDINDEAQISPAGERSQSPVTNCSSFSNPSSVEDETNHSLPTAEQIVNRADNYLTYGKDGEKLMSVNMAGV GATCPGIGIGKSRSDAVTLLDGEHGVPNSDVGKLETSHPSKDCQIVEKMSTDKCSDVPLLTGVGNLDASLPITPCKEEIVKDVQGRNARLKPSYKDATDA ADRGRELQDGSTSKSKKRSADEQCTAIGNPDEEFEYCVKMIRWLECQGHIEKNFRQKFLTWYSLRASTEEMRVVKAYVDTFIEDPSALAEQLVDTFSECI SSSRRSSAVPAGFCMKLWH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Lus10038260 [exp]	0	1
AT3G20015			Eukaryotic aspartyl protease f...		Lus10017362 [exp]	3.5	0.9311
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10018986 [exp]	3.5	0.9338
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	4.9	0.9457
AT3G53990			Adenine nucleotide alpha hydro...		Lus10022602 [exp]	5.5	0.9377
AT3G24020			Disease resistance-responsive ...		Lus10023689 [exp]	5.7	0.9374
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	6.5	0.9191
AT3G24020			Disease resistance-responsive ...		Lus10011767 [exp]	7.4	0.9329
					Lus10025502 [exp]	8.0	0.9280
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	8.5	0.9270
AT1G71740			unknown protein		Lus10042773 [exp]	10.2	0.9282

Compare expression of checked genes

Lus10038260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.