Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56550 66 / 7e-14 ATOXS3 oxidative stress 3 (.1) AT4G26288 56 / 3e-10 unknown protein AT4G31510 51 / 3e-08 unknown protein AT5G24890 49 / 3e-07 unknown protein AT3G43850 49 / 4e-07 unknown protein AT3G03170 48 / 4e-07 unknown protein AT2G24550 46 / 2e-06 unknown protein AT5G21940 44 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025837 [exp] 216 / 2e-72 AT5G56550 65 / 2e-13 oxidative stress 3 (.1) Lus10034985 [exp] 76 / 3e-17 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10012939 [exp] 73 / 3e-16 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10011137 [exp] 64 / 1e-12 AT5G56550 74 / 2e-16 oxidative stress 3 (.1) Lus10043039 [exp] 64 / 1e-12 AT5G56550 69 / 1e-14 oxidative stress 3 (.1) Lus10020142 [exp] 50 / 2e-07 AT2G24550 113 / 9e-30 unknown protein Lus10026939 [exp] 50 / 2e-07 AT2G24550 116 / 4e-31 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190700 [exp] 86 / 2e-21 AT5G56550 81 / 4e-19 oxidative stress 3 (.1) Potri.018G008200 [exp] 51 / 5e-08 AT5G24890 131 / 3e-37 unknown protein Potri.006G273100 [exp] 49 / 3e-07 AT5G24890 129 / 1e-36 unknown protein Potri.009G120300 [exp] 48 / 3e-07 AT4G26288 45 / 2e-06 unknown protein Potri.018G048100 [exp] 45 / 4e-06 AT5G21940 110 / 4e-29 unknown protein Potri.004G158800 [exp] 43 / 9e-06 ND / Potri.006G219800 [exp] 42 / 0.0001 AT5G21940 135 / 3e-38 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038265 pacid=23158184 polypeptide=Lus10038265 locus=Lus10038265.g ID=Lus10038265.BGIv1.0 annot-version=v1.0 ATGGGTGCAACTGATCAAATGGTTTTCCAGCATGATTACAATTCATCTGCTAGCTCAACCACGATTGGATCAGAATCTCATTCATCTGATTCCTCTACCT GTTCTAATTCTTTGGAGTTAGCTGATGATGCATCTTCTTCTTCTTCTTCCTATTCATCTTCGTCTTCACCATCCATCACTAAGTTTGGGAATCATGCTTC AATGTTTGAGCTGTCAGATCTCATGGCTACTCTTCCAATCAAGAGGGGACTCTCGAAATTCTACCAAGGGAAGTCAGAGTCTTTCACATCTCTAGCAAGG GTAATGAGCATTGAGGATCTTGTGAAGAAGGAAGACCCTTATTATAACAACAACAGAAGAAAGATGTTGAAAGCATCAAAGAGCTATGCCAATGGTTTTG ATGCTTCTTCCAAACCCTATAATAAGAATAACAGAAATAAGGTCTCTTCTTTTCTCAACAACAGCACCAGGCTCAGGCCTCCTCTGCTTCTTCCATGTGA AGAAAATAAGCCCTGA
AA sequence Show only first row Show all	>Lus10038265 pacid=23158184 polypeptide=Lus10038265 locus=Lus10038265.g ID=Lus10038265.BGIv1.0 annot-version=v1.0 MGATDQMVFQHDYNSSASSTTIGSESHSSDSSTCSNSLELADDASSSSSSYSSSSSPSITKFGNHASMFELSDLMATLPIKRGLSKFYQGKSESFTSLAR VMSIEDLVKKEDPYYNNNRRKMLKASKSYANGFDASSKPYNKNNRNKVSSFLNNSTRLRPPLLLPCEENKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10038265 [exp]	0	1
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10040557 [exp]	2.4	0.9468
AT5G27830			unknown protein		Lus10029881 [exp]	3.3	0.9475
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	4.6	0.9391
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	5.7	0.9372
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10028303 [exp]	5.9	0.9321
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	6.9	0.9306
AT4G09730		RH39	RH39 (.1)		Lus10018946 [exp]	8.4	0.9185
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	9.9	0.9277
AT1G10600		AMSH2	associated molecule with the S...		Lus10030875 [exp]	10.5	0.9258
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10015625 [exp]	12.0	0.9204

Compare expression of checked genes

Lus10038265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.