Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025836 [exp] 593 / 0 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038266 pacid=23158477 polypeptide=Lus10038266 locus=Lus10038266.g ID=Lus10038266.BGIv1.0 annot-version=v1.0 ATGCACGAACCTGCTCACTCGTCGCGGTCGCGGTCGCCGTCGCCGGCAAAGAAATTACCACCTCCGTCCCCAAAAGATCCGGTTGACGAAAACTTCTTAT TGAGCTATCGAGACACTGGAAGCCGAATCAGAAGCGATAAACAAATGCGCGAATCTGCTCACAAGTCGCCGCTGCCGTCGCCGGCAAAGAAACTACGTGT TCCGTTCCCAAAAGATCTCGACGACAACTACTTGAGCTATCAAGAAACTAGCCGCCGAAAAGAAGCGGGGAATCTCAATAACTCCACCAAAAATTTCATG TCTCCGACGAAATCCACTGTTTCAAAGCTTAACAATCACCCTTCCCTGAAGAAAGAACGGATTAACGAATCCCCTGATCATGTCGATGATGGTGGTGCAT TAAGGGTGGAATATGAAAAGGATGGCCACCTATTTCTGCGGCACAGGTCAGACAAGCGAAGCAACCTCATCCAGAGAATTGCGTCTGATGATTTTGAGAC GGTGAAGGTGGGGGGATATTCCTCAGTTTTCTCTAGGGTTTTTGAGTTTTTGCTGCTTTTGATGATCTTGCTACTCTCCACTGCTTGCATCACTTTAATG AGCACTGATCTCCCTTGCCGCAACTCTACCTGTTATCATCACCACCATTATCTTGACAACTACCCAGTGGCGTTTCTGAGACTAAGAGAGAACAATGGAG CACCAACATCGCATGATTTCATGGTAGTTGAGCCACCTATGGATGTTGAACAAGCAGGAAAGATGATGGCTGAGCATCCTGTTACTGATATGCATATTCA ACAAGTGGAAACCTATAGTTCTGGGAATGAACCAATGAAAGCAGCTGTGGAACAAGTGGCTCAAATAACTCTGAATCCAGATGACAAAGGGAGGATTACT ATAGAGAAAGGAAAGGGCAAGGATCTGAGTCCTAAAGCAAACCATCTAGCTAGGAATTGGGGTATTGACTTTGATGATGATTACAATAGGCCGTCCCTGG TGCCTATCTTTGTAGTTACTGCAATTGCTTCAATGATGGTATTGGTGGTGCTTATCTCCTGCACACTGGCGAGGAAGAGGAGAAATTATAATATCTCAAG GCGTGGCATTGATCATCAGTACCAGCGCCATTTAGAGCCTGGCTTACTGCACACACAGAATCCCGACATGCCAGAAACATGGAGCAGCAGCAGCAGCTCA GTTAGGGGCAGGGGAGCACCATCACTACAACAACCCTCTTGGAAGAAATGA
AA sequence Show only first row Show all	>Lus10038266 pacid=23158477 polypeptide=Lus10038266 locus=Lus10038266.g ID=Lus10038266.BGIv1.0 annot-version=v1.0 MHEPAHSSRSRSPSPAKKLPPPSPKDPVDENFLLSYRDTGSRIRSDKQMRESAHKSPLPSPAKKLRVPFPKDLDDNYLSYQETSRRKEAGNLNNSTKNFM SPTKSTVSKLNNHPSLKKERINESPDHVDDGGALRVEYEKDGHLFLRHRSDKRSNLIQRIASDDFETVKVGGYSSVFSRVFEFLLLLMILLLSTACITLM STDLPCRNSTCYHHHHYLDNYPVAFLRLRENNGAPTSHDFMVVEPPMDVEQAGKMMAEHPVTDMHIQQVETYSSGNEPMKAAVEQVAQITLNPDDKGRIT IEKGKGKDLSPKANHLARNWGIDFDDDYNRPSLVPIFVVTAIASMMVLVVLISCTLARKRRNYNISRRGIDHQYQRHLEPGLLHTQNPDMPETWSSSSSS VRGRGAPSLQQPSWKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038266 [exp]	0	1
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10033489 [exp]	2.4	0.9288
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Lus10005783 [exp]	2.4	0.8995
AT4G10710		SPT16	global transcription factor C ...		Lus10039490 [exp]	2.6	0.8833
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	4.2	0.9165
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	7.7	0.8970
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10039192 [exp]	9.2	0.8904
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10009963 [exp]	9.7	0.8650
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	12.5	0.8697
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	13.4	0.8784
AT2G27470	CCAAT	NF-YB11	"nuclear factor Y, subunit B11...		Lus10004867 [exp]	15.0	0.8675

Compare expression of checked genes

Lus10038266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.