Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033257 [exp] 77 / 7e-18 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038267 pacid=23158409 polypeptide=Lus10038267 locus=Lus10038267.g ID=Lus10038267.BGIv1.0 annot-version=v1.0 ATGTCCAATTCTTTGTATGCTTCTGGCCCGTCGACCGGCCCACTTTCAATTCAGACTTTCTCACCAGTTGCTCCCGACGCTCAATATATCGCCAATGGAA AATCAATCACAAACACTGCCGAGATTCCACCTTCTCCAACCCAGTTCCTAATTGCCGATACTCCTGGCCTAAATCCGACTCAGGGTTTGTTTCTTCTCCT TAAAAATAGGAGCTTAACCCTCGTCATAGGGTTTTCATCATCAGTCGTCATCTTCACCTTCAGCAGCAGCATCATTTACCATCGCCATCCGCATCACCAC GTTCACCTCTACCCTTCTTCCCTCTCCGCACCTCCTCAAATCAACAGCAACATCGCCGTGAGTCGGCAACCACAAACACTGCCATCACCAACGTCAAACC GTCGCCGCAAGTTCACACGACCGTTCCTATCCTCGCTATTTACCATCTTCTTGGATTCACTGATCACTCAATTGTGGAACCACCATGCAGCCTCAATCGA CCAGCCAGTCGGGGCAGACCAAGCCCGGAAACTCTGTGACGCGCACAAACACGACGTCAGCAAGGACTATCACGCTGAGTACAAACTCGGTTACCACACC CTCCATGGACGCTAA
AA sequence Show only first row Show all	>Lus10038267 pacid=23158409 polypeptide=Lus10038267 locus=Lus10038267.g ID=Lus10038267.BGIv1.0 annot-version=v1.0 MSNSLYASGPSTGPLSIQTFSPVAPDAQYIANGKSITNTAEIPPSPTQFLIADTPGLNPTQGLFLLLKNRSLTLVIGFSSSVVIFTFSSSIIYHRHPHHH VHLYPSSLSAPPQINSNIAVSRQPQTLPSPTSNRRRKFTRPFLSSLFTIFLDSLITQLWNHHAASIDQPVGADQARKLCDAHKHDVSKDYHAEYKLGYHT LHGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038267 [exp]	0	1
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008441 [exp]	5.3	0.8910
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10009583 [exp]	7.6	0.8861
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	10.2	0.8746
AT4G31920	GARP	ARR10	response regulator 10 (.1)		Lus10025044 [exp]	10.4	0.8752
					Lus10002291 [exp]	11.8	0.8703
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10032184 [exp]	14.1	0.7486
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10032889 [exp]	14.3	0.7484
AT1G71530			Protein kinase superfamily pro...		Lus10001470 [exp]	14.9	0.8691
					Lus10022993 [exp]	15.9	0.8609
AT5G52170	HD	HDG7	homeodomain GLABROUS 7 (.1)		Lus10035095 [exp]	17.2	0.8636

Compare expression of checked genes

Lus10038267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.