Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11560 148 / 2e-37 LETM1-like protein (.1.2.3.4) AT5G06220 140 / 4e-34 LETM1-like protein (.1.2) AT3G59820 52 / 1e-06 LETM1-like protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025835 [exp] 1306 / 0 AT1G52155 353 / 2e-114 unknown protein Lus10021329 [exp] 160 / 1e-40 AT3G11560 976 / 0.0 LETM1-like protein (.1.2.3.4) Lus10017005 [exp] 154 / 1e-38 AT3G11560 975 / 0.0 LETM1-like protein (.1.2.3.4) Lus10029426 [exp] 83 / 2e-16 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187100 [exp] 757 / 0 AT5G06220 145 / 1e-35 LETM1-like protein (.1.2) Potri.016G074900 [exp] 171 / 3e-44 AT3G11560 1033 / 0.0 LETM1-like protein (.1.2.3.4) Potri.006G208300 [exp] 164 / 4e-42 AT3G11560 1056 / 0.0 LETM1-like protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07766 [flax] [poplar] LETM1 LETM1-like protein
Representative CDS sequence Show only first row Show all	>Lus10038268 pacid=23158209 polypeptide=Lus10038268 locus=Lus10038268.g ID=Lus10038268.BGIv1.0 annot-version=v1.0 ATGGCTTCCCATTTGGTTCTCCTGCTGCCCAGTCAACTTCATTCGTCGAAATCAATTGGAGTAAACCTAAATGCTGCTGCACCCGACTTGCCCAAGCTAG GTGCTGAAAAACTCAGGAACCCCATTTTCTCCCCAAGGAACAACAATGTCCCTGGTGGGATTTTGTTTTCTTCTGGTGTTTCTGTAAGAGTGTTATCATC TGTGGCCCCAGCCTCTTATTGTGATAATTTTAAGACTGAGAATGATATTGCTGTCCCCAAAGCTGATAACGATACAGTGGAGTTCAGTCGTGTGAATTGT CTTGTATGGGGATTGCATGAATCTGCTTCAAGCTTTTCCCATCAAGTTGAGTCACTTGGTCTGGCAGCAAGTGTCCCAGAGCTTGCATTTGCTTGGAATG GGAAGGATGTCCACGCATGGCACAAACGTATTGCATATCATGTGGCTGTTTATGCTTTGATGAGAACCATAATGGAGATGGAGCTTTTACTTTCTCATGA TCGTCAAAACAATGGATCTCCAGTCAAAGAAATCTTGGCCCCAAATATGAAAGTGTTGGGAGACTATATCGAGAGTCGATTGGGTGCAAAGCATTCAGAT CTGGTTGATTGGTTTAGAGAGGTGGAGCTGCCTCGAGTAACAGGGTTTTTTGTCCCCTTCCTGAAGAAGTGGTCAATGGAGTATGCTGGAAGTGGTGTTG CAGGGATTATTTTAGCTATAAGTGGCTGTGCTGCTGTTGGGAAAGTGGGTTGTGGAAAAATTTCTTCGCCAATGCTTGCTTGTTCTACTCAGAATGTACT TGTTGAGCTCATGGATTCTTCACACAATATTGTAGAAGTTGAAAAATTGCATCAGTTAGCGATTGACGCAGGATTTGAGCACAACTTCCTTTCCCATTTT GGTTCGAAGATCTTGCCATGCAACAAAACTGAAGAACTAGAATTTTGGATTGGCCTGGCTCAAAAAAAGCTATCAATAGCATTCTATGATGTACTTTCCA TGAAGGTCACAGCCAACTCTTCTTCAAAGGTCCATGCAGATACCCTGGCTACCCTTGGACTATTTGCATATCTGGGACGAAAGACCCGATTATTCTTGAC GAAAATGGGAATCAAGGATCTTGATGAGCAGCTTAAGGATTTCCTAAGTTACCTCGAGTGTGGTAGCCTTTTCATTTACCCCGAGATTTCCCATGTTTCA AATTATCAACGGTTCATCGAGGTTGTGACTGACGAAATTGGATGGCTTGAATTCTACGCTGCATCTTCTTCTCTTAACAATCAAGAAAGGAAAAGATCAA AGCAGCATGCAGTTCAAGCAGAGCAAGAGATCATTCTATCCACAGTCTTCACTGTTTGTTACGATGTCTTCTCTGGCTTTGCTCATTTCAGTCGTTCAAC TCAAAAGCCTTTAGATGCCGAATTGTTGGAATTTTTATTCCGGAGTCAAAGTCTCCTAGCTATTTTTCTGGAAGACTACAGAGCAGCTTATGGTAGATTT GGTGAACCAATGAAGCTATGTGACTCAGGTGCCTCTGACTACGTGCAGCCCCTAAAAGCAAAGAACTTGAACAAGTCATCTCAGAAGCTAGAAGATAACT CTGCCCCTACTTCTGAAGTTAGAAAGGTTAGAAGCAAAGATGAAACGAAACCCGAGACACCGAGCACTAAACCGAAGCCAAGTTCTCTGGACATGAACAT AATCGGTAAATACAGGCTCAAATTGATGTCGAAAACCGTGGATGTGTGGATGGGAACCCAGTTGCTGGTAGATGATATCATCGATGCTTTGGAGCTAATC AAAAAGCAGTTGCGTGGGCAGAGAATTTCAAAGAGGGAGAAGAGGAGGCTTGAGAGAACAATGAAAGACATAGCTTCTCTTGTCCCCATCACAATTCTAA TGCTAATTCCTGTGTCTGCAGTAGGCCATGCTGCAATGCTGACAGCTATCCAGAGATACGTGCCGTGCTTGATTCCTTCTCCTTACTCGTCGGACAGGCT AGACATGGTGAAACAACTGAAGAGAACAAAGAAACTGGAAGTAGAGTCATGGGGAATCCTGGAAGATCTTAGCCCTGGAATTAACAGGGAGGACTCGTCC TGTAAAATACCATAA
AA sequence Show only first row Show all	>Lus10038268 pacid=23158209 polypeptide=Lus10038268 locus=Lus10038268.g ID=Lus10038268.BGIv1.0 annot-version=v1.0 MASHLVLLLPSQLHSSKSIGVNLNAAAPDLPKLGAEKLRNPIFSPRNNNVPGGILFSSGVSVRVLSSVAPASYCDNFKTENDIAVPKADNDTVEFSRVNC LVWGLHESASSFSHQVESLGLAASVPELAFAWNGKDVHAWHKRIAYHVAVYALMRTIMEMELLLSHDRQNNGSPVKEILAPNMKVLGDYIESRLGAKHSD LVDWFREVELPRVTGFFVPFLKKWSMEYAGSGVAGIILAISGCAAVGKVGCGKISSPMLACSTQNVLVELMDSSHNIVEVEKLHQLAIDAGFEHNFLSHF GSKILPCNKTEELEFWIGLAQKKLSIAFYDVLSMKVTANSSSKVHADTLATLGLFAYLGRKTRLFLTKMGIKDLDEQLKDFLSYLECGSLFIYPEISHVS NYQRFIEVVTDEIGWLEFYAASSSLNNQERKRSKQHAVQAEQEIILSTVFTVCYDVFSGFAHFSRSTQKPLDAELLEFLFRSQSLLAIFLEDYRAAYGRF GEPMKLCDSGASDYVQPLKAKNLNKSSQKLEDNSAPTSEVRKVRSKDETKPETPSTKPKPSSLDMNIIGKYRLKLMSKTVDVWMGTQLLVDDIIDALELI KKQLRGQRISKREKRRLERTMKDIASLVPITILMLIPVSAVGHAAMLTAIQRYVPCLIPSPYSSDRLDMVKQLKRTKKLEVESWGILEDLSPGINREDSS CKIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	0	1
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10024384 [exp]	1.4	0.8970
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	1.4	0.8988
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021302 [exp]	2.4	0.8859
AT5G48385			FRIGIDA-like protein (.1)		Lus10008744 [exp]	6.5	0.8627
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	8.0	0.8448
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	9.8	0.8850
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10043390 [exp]	14.5	0.8287
AT3G61670			Protein of unknown function (D...		Lus10003040 [exp]	18.0	0.8486
AT5G58630			unknown protein		Lus10018244 [exp]	18.5	0.8160
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	20.1	0.8023

Compare expression of checked genes

Lus10038268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.