Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52155 392 / 1e-137 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025835 [exp] 392 / 1e-129 AT1G52155 353 / 2e-114 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187300 [exp] 387 / 2e-135 AT1G52155 468 / 3e-167 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038269 pacid=23158503 polypeptide=Lus10038269 locus=Lus10038269.g ID=Lus10038269.BGIv1.0 annot-version=v1.0 ATGGCTGACGCTTCAGAGACGCCGTGGGTGAACGAATCGTACCAGCGGGTTGAAATTATTAGTAACTCGTTTTTTGTTATTGTTGCTATACTACTAGAGC AGAGGAATAATTTGCAGTGGACATTGGCATCTGTTCCGTTGATCAAATCTCTGCAATTGGCTCTTTCATTCCTCTTCTGGTATTCATGTTTCTATTCACA GATATGCTCGTTATGGATGTCGTTTGGGGTGTACATAACTGGAGTGCTTTTCCAGACTGCTTCATTCGTGTCCTTTCTGCTCATATCTCATGGTTACTGC ATCATGTGTGAGCGCCTTTCAGTAACTGAACGCCGCACTACAGCTGCACTTGCTTGTGTCTTTTACATGACTCTAGTTGGGTATAGAGCTTCTGTACCGT ACTTCACTATTTTGCTTCTTCTCAACTACGTAGTCTCATTCTATCTGATTTTCTACCTCATATCCCAAAACCTATTGCTTTTACAAGAGCAATTAAATTT TATTGAGGATGAGGATGTGCAAGGAATGCATGGTGCAGTCTATATGAAGTATCTTATGTTCAAGAAATTCCGGAGTGCAATGCAAATAGTAGCAGTTGTA GAAGCTATGATATTCATCAATGTGGACAATTCCCCAGATCATTACTGGCTACGGCTGCTAGTTAGAGAGTGGGCTCAGTTCTGCATTTTTTCGTTCATAG GATGGACTTTTAGATCGCAAGACTTGGCACCACGTTTCTCAGTCATGCCCACTGTAAAAACTAAAGGAGACAAAATGGTCCCTCCCATTTATAGTATTGA AATGGACGCGGCAACTTTCAAGGAGTTCAGCTCTCGTGAATGGCAAATTGGAGTGCCAACATCTCAATCTTCATCACGCGATAAGAGCTCAATGGATTCA ATAATAGTAGTAATTCAGCATCCACACCTTCAACGGGGGACAGCTTCGAAACCAGAACTTGTATAG
AA sequence Show only first row Show all	>Lus10038269 pacid=23158503 polypeptide=Lus10038269 locus=Lus10038269.g ID=Lus10038269.BGIv1.0 annot-version=v1.0 MADASETPWVNESYQRVEIISNSFFVIVAILLEQRNNLQWTLASVPLIKSLQLALSFLFWYSCFYSQICSLWMSFGVYITGVLFQTASFVSFLLISHGYC IMCERLSVTERRTTAALACVFYMTLVGYRASVPYFTILLLLNYVVSFYLIFYLISQNLLLLQEQLNFIEDEDVQGMHGAVYMKYLMFKKFRSAMQIVAVV EAMIFINVDNSPDHYWLRLLVREWAQFCIFSFIGWTFRSQDLAPRFSVMPTVKTKGDKMVPPIYSIEMDAATFKEFSSREWQIGVPTSQSSSRDKSSMDS IIVVIQHPHLQRGTASKPELV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52155			unknown protein		Lus10038269 [exp]	0	1
AT4G24130			Protein of unknown function, D...		Lus10017330 [exp]	5.1	0.9418
AT4G15563			unknown protein		Lus10033973 [exp]	6.2	0.9036
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	7.5	0.9412
AT4G02830			unknown protein		Lus10042573 [exp]	8.3	0.9366
AT2G37530			unknown protein		Lus10024416 [exp]	8.5	0.9358
AT1G61240			Protein of unknown function (D...		Lus10018456 [exp]	9.9	0.8981
AT2G16750			Protein kinase protein with ad...		Lus10014122 [exp]	10.7	0.9319
AT1G60420			DC1 domain-containing protein ...		Lus10013017 [exp]	12.5	0.9236
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10022066 [exp]	13.4	0.9305
					Lus10034812 [exp]	13.5	0.9288

Compare expression of checked genes

Lus10038269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.