Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16300 138 / 8e-41 Uncharacterised protein family (UPF0497) (.1) AT1G79780 129 / 1e-37 Uncharacterised protein family (UPF0497) (.1) AT2G35760 45 / 1e-05 Uncharacterised protein family (UPF0497) (.1) AT4G15630 40 / 0.0004 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025833 [exp] 331 / 1e-116 AT3G16300 153 / 1e-46 Uncharacterised protein family (UPF0497) (.1) Lus10005154 [exp] 42 / 0.0001 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1) Lus10038800 [exp] 42 / 0.0002 AT2G35760 243 / 2e-82 Uncharacterised protein family (UPF0497) (.1) Lus10039060 [exp] 41 / 0.0003 AT2G35760 242 / 5e-82 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G050400 [exp] 206 / 2e-67 AT3G16300 137 / 2e-40 Uncharacterised protein family (UPF0497) (.1) Potri.001G188000 [exp] 192 / 5e-62 AT3G16300 131 / 5e-38 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 44 / 1e-05 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 43 / 5e-05 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.006G016900 [exp] 42 / 7e-05 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10038271 pacid=23158467 polypeptide=Lus10038271 locus=Lus10038271.g ID=Lus10038271.BGIv1.0 annot-version=v1.0 ATGACGACGAGCAAGGCCGGAGGAGGAGAGAAAGTGCCGGAGGTTTTCGTGGCAGTGGGGGCGGAGACAGAGAATAGCAGCAGAAGCAGCACAATGAGCA GCCCAGTGGCGAAAATGTCAGGTGGTGGTCGGCGGAGAGGTGAAGTACTGCAGGGGACGTTGCGGCTGCTGTGCTTGGTGACATCCCTGACCTCGATGGG TTTCATGGTTACAGCTAAGCAGTCAAGCTCCATCTCCATCTTTGGCTTTATGCTCCCTCTCAATTCCACCTGGTCCTTCTCCACCTCCTTCCAGTACTTG GTAGGGGTATCAACAGTTGCGGCAGCACACTCGCTAGTCCAGCTGCTGATAACATCAGCAAGGCTAATCAAGAACTCTCCCGCCATACAATCTCGAGCCT ACGCATGGGTGGTGTTCGCGGCTGATCAAGCGCTGGCGTACGCGGTGGTGAGCGGGGGAGCAGCATCGGCCGGAGTGAGCAACTTGAACAGAACCGGGAT AAGGCACACCTCCCTTCCAAACTTCTGCAAGCCGTTGAAGAGCTTCTGTGACCATGTAGCGGTGTCAATTGGGTTCGCCTTCTTTACCTTTTTCTTGCTG GCTGCCTCTGCTGTTCACCAAGTTCTCTGGCTCTCCAATTCCTCTCCGGTGTATTAA
AA sequence Show only first row Show all	>Lus10038271 pacid=23158467 polypeptide=Lus10038271 locus=Lus10038271.g ID=Lus10038271.BGIv1.0 annot-version=v1.0 MTTSKAGGGEKVPEVFVAVGAETENSSRSSTMSSPVAKMSGGGRRRGEVLQGTLRLLCLVTSLTSMGFMVTAKQSSSISIFGFMLPLNSTWSFSTSFQYL VGVSTVAAAHSLVQLLITSARLIKNSPAIQSRAYAWVVFAADQALAYAVVSGGAASAGVSNLNRTGIRHTSLPNFCKPLKSFCDHVAVSIGFAFFTFFLL AASAVHQVLWLSNSSPVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16300			Uncharacterised protein family...		Lus10038271 [exp]	0	1
AT4G25780			CAP (Cysteine-rich secretory p...		Lus10006981 [exp]	4.9	0.7371
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	7.6	0.7506
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	8.3	0.7366
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	14.0	0.7349
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	25.5	0.7246
AT1G72020			unknown protein		Lus10009443 [exp]	32.4	0.6668
AT5G19090			Heavy metal transport/detoxifi...		Lus10031514 [exp]	38.8	0.7069
AT3G29310			calmodulin-binding protein-rel...		Lus10026469 [exp]	44.5	0.6734
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	51.5	0.7067
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10006264 [exp]	66.7	0.6766

Compare expression of checked genes

Lus10038271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.