Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56710 169 / 9e-51 Ribosomal protein L31e family protein (.1.2) AT2G19740 168 / 1e-50 Ribosomal protein L31e family protein (.1) AT4G26230 167 / 4e-50 Ribosomal protein L31e family protein (.1) AT5G50920 173 / 2e-46 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 172 / 5e-46 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G15450 169 / 3e-45 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 167 / 2e-44 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G51070 164 / 2e-43 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT1G74310 152 / 3e-39 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 147 / 4e-38 CLPB2 casein lytic proteinase B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025832 [exp] 220 / 2e-68 AT5G50920 223 / 5e-67 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10025830 [exp] 201 / 4e-63 AT2G19740 200 / 5e-68 Ribosomal protein L31e family protein (.1) Lus10042028 [exp] 199 / 2e-62 AT2G19740 198 / 3e-67 Ribosomal protein L31e family protein (.1) Lus10018032 [exp] 191 / 2e-59 AT2G19740 191 / 3e-64 Ribosomal protein L31e family protein (.1) Lus10012953 [exp] 194 / 7e-59 AT5G51070 206 / 3e-61 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10015698 [exp] 169 / 8e-51 AT5G56710 201 / 2e-68 Ribosomal protein L31e family protein (.1.2) Lus10037703 [exp] 167 / 6e-50 AT5G56710 199 / 1e-67 Ribosomal protein L31e family protein (.1.2) Lus10032544 [exp] 174 / 2e-47 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 174 / 1e-46 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070100 [exp] 174 / 4e-53 AT2G19740 170 / 6e-56 Ribosomal protein L31e family protein (.1) Potri.009G064100 [exp] 165 / 3e-49 AT2G19740 164 / 1e-53 Ribosomal protein L31e family protein (.1) Potri.001G269600 [exp] 162 / 2e-48 AT2G19740 162 / 5e-53 Ribosomal protein L31e family protein (.1) Potri.005G197400 [exp] 171 / 2e-47 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G105900 [exp] 174 / 8e-47 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 174 / 1e-46 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.004G124800 [exp] 167 / 2e-44 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 166 / 4e-44 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.006G262700 [exp] 166 / 5e-44 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.012G112000 [exp] 157 / 7e-41 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01198 [flax] [poplar] Ribosomal_L31e Ribosomal protein L31e CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10038272 pacid=23158480 polypeptide=Lus10038272 locus=Lus10038272.g ID=Lus10038272.BGIv1.0 annot-version=v1.0 ATGGAACATCTGGAGAAGAAGAAGCGACAAGGTGATAACCAGCAACTACAGACTGAGTTTCTTGACAAGTATGGCACCGACTTAACCAAGTCTGCTCAGG AGGCAAGAAAAAACAATAAGAATCCTCTCAACAAGCTGGATCCTGTTACAGGGCGCCATCAGGAAATCGAAAGGGTCATCCAAATCCTCTGTAAGCGCAA GAAATGCAACCCTTGCCTAGTCGGAGACCCTTGGGTTGGCAAGACAGTGATTGTCGAAAGCCTAGCTTCGAAAATCATAACTCTCCAAGTCCCTCCCAAG CTTCTAGGGAAAAAGATATATGCATTAGACATGGGACGCCTGATTGCCGGGGCAGCGAATAGAGGAGAATTTGAAGAGAGGCTAATTAATGTGATCGACG AAGTTAAACAAAGCCAAGGAGTAATCATTCTGTTCATCGATGAACTGCATACCTTGGTAGGAGCAGGTGGATGTGGTAACGCGTTAGATGCTGCCAACAT TCTCAAACCACCACTAGCCAGAGGAGAAATCAAGAAACCTAGCTCCGTCGTACTGTTCGACGAAATCGAAAAAGCCCATCCCAGCGTCTTCAACGCCCTT CTCCAGATCCTAGATTACGGGGCTTTGACTGAGGGAACTGGATGGAAGGCCGATTTCAGAAACGCAATCATCATCATGACATCGAACATCGGACAGGGTA TTGTGATCTCAGCGAAGCAGGGTGGTGACGACGATGAGGCGAAATTAAAGATTGCAGAGGAGCTAAAGGCCAGCTTCAGGGCGGAGTTCCTGAATAGAAT TGATGAGATTGTAATATTCAGGGCGTTGAAGCCGGAGGAGGTGAAGAAAATCGTTGAGATTATGATTAGGGAAGTGACAGAGAGGATTAGTGTTTCCAAG GGAATTGAAATTACAGTGGGGGATGGGTTGAAGAACAAGGTTATAAAAGAAGGGTATGAAGTCAAGTATGGAGCGAGGCCATTGAAGAGGGCGATCGTGA GGCTGGTTGAAGATCCATTGGCTGATGCAGTTTTGGGCGGGAGAGTAGGAGAAGGAGGCGCCATTACTCTATCTTCCGACGACCGAAGGGAGCCAGACAA GATGGTTGAGAAGACTAGGATAAGGAAAGAAGAGGTGGTGACCAGAGAGTACACCATCAACCTTCACAAGCGGTTGCACGGCTGCACATTCAAAAAGAAG GCTCCTAAGGCCATAAAGGAGATCAGAAAGTTTGCTGAGAAGGCTATGGGGACAAAGGATGTCAGAGTGGATGTGAAGCTGAACAAACAGATATGGAGCA AGGGGATCAGGAGTGTTCCAAGGAGAATCAGGGTTCGTATTGCACGCAAGAGGAACGATGATGAAGATGCAAAGGAGGAGCTCTATTCCCTTGTTACTGT TGCTGAAATACCAGAAGGACTTAAGGGTCTGAGCACAAAGGTTATTGAAGATGAAGAGTAA
AA sequence Show only first row Show all	>Lus10038272 pacid=23158480 polypeptide=Lus10038272 locus=Lus10038272.g ID=Lus10038272.BGIv1.0 annot-version=v1.0 MEHLEKKKRQGDNQQLQTEFLDKYGTDLTKSAQEARKNNKNPLNKLDPVTGRHQEIERVIQILCKRKKCNPCLVGDPWVGKTVIVESLASKIITLQVPPK LLGKKIYALDMGRLIAGAANRGEFEERLINVIDEVKQSQGVIILFIDELHTLVGAGGCGNALDAANILKPPLARGEIKKPSSVVLFDEIEKAHPSVFNAL LQILDYGALTEGTGWKADFRNAIIIMTSNIGQGIVISAKQGGDDDEAKLKIAEELKASFRAEFLNRIDEIVIFRALKPEEVKKIVEIMIREVTERISVSK GIEITVGDGLKNKVIKEGYEVKYGARPLKRAIVRLVEDPLADAVLGGRVGEGGAITLSSDDRREPDKMVEKTRIRKEEVVTREYTINLHKRLHGCTFKKK APKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGLKGLSTKVIEDEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19740			Ribosomal protein L31e family ...		Lus10038272 [exp]	0	1
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10011773 [exp]	10.1	0.8539
AT3G02080			Ribosomal protein S19e family ...		Lus10032992 [exp]	16.7	0.8525
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10023730 [exp]	20.1	0.8463
AT1G70190			Ribosomal protein L7/L12, olig...		Lus10036228 [exp]	21.4	0.8398
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10022906 [exp]	27.9	0.8310
AT4G14320			Zinc-binding ribosomal protein...		Lus10000176 [exp]	32.6	0.8419
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10000975 [exp]	40.8	0.8307
AT5G59850			Ribosomal protein S8 family pr...		Lus10005960 [exp]	42.6	0.8298
AT1G76190			SAUR-like auxin-responsive pro...		Lus10034570 [exp]	61.9	0.8082
AT5G47320		RPS19	ribosomal protein S19 (.1)		Lus10027711 [exp]	64.3	0.8025

Compare expression of checked genes

Lus10038272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.