Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25830 199 / 8e-62 GATA GATA12 GATA transcription factor 12 (.1) AT4G32890 199 / 9e-62 GATA GATA9 GATA transcription factor 9 (.1) AT2G45050 174 / 6e-53 GATA GATA2 GATA transcription factor 2 (.1) AT3G60530 162 / 2e-48 GATA GATA4 GATA transcription factor 4 (.1) AT5G66320 139 / 1e-38 GATA GATA5 GATA transcription factor 5 (.1.2) AT4G34680 137 / 2e-38 GATA GATA3 GATA transcription factor 3 (.1.2) AT3G51080 136 / 8e-38 GATA GATA6 GATA transcription factor 6 (.1) AT4G36240 130 / 3e-36 GATA GATA7 GATA transcription factor 7 (.1) AT3G24050 123 / 4e-33 GATA GATA1 GATA transcription factor 1 (.1) AT1G08010 121 / 4e-32 GATA GATA11 GATA transcription factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025829 [exp] 527 / 0 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10037572 [exp] 321 / 1e-109 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10011430 [exp] 310 / 3e-105 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10028178 [exp] 177 / 7e-54 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10023684 [exp] 126 / 5e-35 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10011762 [exp] 124 / 1e-33 AT3G24050 174 / 1e-53 GATA transcription factor 1 (.1) Lus10031096 [exp] 118 / 5e-33 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10037994 [exp] 122 / 1e-31 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10009227 [exp] 121 / 2e-31 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188500 [exp] 275 / 1e-91 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.018G044900 [exp] 227 / 4e-72 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.006G237700 [exp] 218 / 1e-68 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.014G058600 [exp] 173 / 1e-52 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.002G142800 [exp] 160 / 1e-47 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.007G016600 [exp] 161 / 1e-46 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.005G117600 [exp] 153 / 8e-44 AT5G66320 236 / 2e-75 GATA transcription factor 5 (.1.2) Potri.009G123400 [exp] 146 / 3e-41 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.004G161500 [exp] 145 / 7e-41 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2) Potri.010G223300 [exp] 139 / 2e-38 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10038273 pacid=23158357 polypeptide=Lus10038273 locus=Lus10038273.g ID=Lus10038273.BGIv1.0 annot-version=v1.0 ATGGAGTCATCTGACTTCTTCATGGCTGCCTACTACAACACCTCCCTCCACTCCACCGACTTCTTGCCGACAGAGACCAACCCCACCGCCGACCATGCTA ATTTCGCCGTCGACGACCTCCTTGATTTCCCCACCGACGACGACGCCATTATGACCGATGGCTTCTTCGACAATCTTGCCAAAAATTGCGATTCCCCTGC ATTTACCCCCAACGACAGCTCCAATTCCTCTTCCACCACTTCCGCCGGCTACCAGAGCATCGCCGATTCTCACTTCTCCAGCGAGCTATGCGTTCCGTAC GATGACATGGCTGAACTGGAGTGGCTCTCAAATTTTGTGGACGACACGTCGTTTTCGACGGACCAAACACTCCAAACCAACCTCCACATGCTACCGGGGT CCAAACCCGAGCCAATGGGGCGTAATGCGACCACCAGCACCAACAACAACAACTCAATGTTCCAAGCCGATACCCCGTTACCCGGTAAGGCTCGGTCCAA GCGGTCAAGAGTTGCTCCGGGCAATTGGACCACCCGTCTTCTCCACCTCACACCATCAATCAAAGGCGCTTCCAAGAAAAAGCAAGAAGGTCCAAACCCG AACCAAAATGGCCCGAGTTCAGGTTCCGACTCCTCCGCTATTCGAAGGTGCTTACATTGTGGGTCTGATAAAACCCCACAATGGAGGACAGGACCCATGG GCCCGAAGACGTTGTGCAATGCGTGCGGTGTCCGGTACAAGTCAGGGCGGTTAGTAGCTGAGTACCGCCCTGCAGCTAGTCCGACGTTTGTAGCGGCGAA GCATTCGAATTCGCATAGGAAGGTGTTGGAGCTGAGAAGGCAGAAGGAGATGCATATGGTTCAGCAGCAGGAGCAGTTCCTGAATCAGAGTAGCGGCATG TTTGGTGATCAATATTTGATTAATCATCAACACACCCGGTGGCCACAATTTTAG
AA sequence Show only first row Show all	>Lus10038273 pacid=23158357 polypeptide=Lus10038273 locus=Lus10038273.g ID=Lus10038273.BGIv1.0 annot-version=v1.0 MESSDFFMAAYYNTSLHSTDFLPTETNPTADHANFAVDDLLDFPTDDDAIMTDGFFDNLAKNCDSPAFTPNDSSNSSSTTSAGYQSIADSHFSSELCVPY DDMAELEWLSNFVDDTSFSTDQTLQTNLHMLPGSKPEPMGRNATTSTNNNNSMFQADTPLPGKARSKRSRVAPGNWTTRLLHLTPSIKGASKKKQEGPNP NQNGPSSGSDSSAIRRCLHCGSDKTPQWRTGPMGPKTLCNACGVRYKSGRLVAEYRPAASPTFVAAKHSNSHRKVLELRRQKEMHMVQQQEQFLNQSSGM FGDQYLINHQHTRWPQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10038273 [exp]	0	1
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	1.0	0.9380
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028582 [exp]	2.0	0.9329
AT1G76190			SAUR-like auxin-responsive pro...		Lus10034570 [exp]	3.9	0.8869
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10017656 [exp]	5.2	0.8774
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018887 [exp]	7.5	0.8812
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028583 [exp]	9.5	0.8829
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	11.7	0.9014
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	13.3	0.8967
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10011262 [exp]	14.7	0.8580
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	24.9	0.8760

Compare expression of checked genes

Lus10038273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.