Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52140 120 / 7e-34 unknown protein AT3G16330 117 / 4e-33 unknown protein AT4G29110 88 / 1e-21 unknown protein AT4G32860 42 / 9e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025828 [exp] 348 / 1e-123 AT1G52140 138 / 8e-41 unknown protein Lus10037566 [exp] 155 / 4e-48 AT1G52140 79 / 2e-18 unknown protein Lus10014153 [exp] 153 / 2e-47 AT4G29110 84 / 1e-20 unknown protein Lus10034944 [exp] 92 / 1e-23 AT1G52140 100 / 3e-27 unknown protein Lus10012967 [exp] 86 / 2e-21 AT1G52140 105 / 5e-29 unknown protein Lus10006040 [exp] 59 / 2e-10 AT1G52140 78 / 2e-17 unknown protein Lus10005478 [exp] 58 / 3e-10 AT1G52140 89 / 2e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188900 [exp] 206 / 1e-67 AT1G52140 127 / 2e-36 unknown protein Potri.003G049800 [exp] 166 / 5e-52 AT1G52140 129 / 1e-37 unknown protein Potri.018G086500 [exp] 137 / 9e-41 AT4G29110 139 / 3e-41 unknown protein Potri.018G046500 [exp] 91 / 1e-22 AT1G52140 94 / 1e-23 unknown protein Potri.006G236700 [exp] 91 / 1e-22 AT4G32860 94 / 4e-24 unknown protein Potri.014G139900 [exp] 90 / 3e-22 AT1G52140 87 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038274 pacid=23158385 polypeptide=Lus10038274 locus=Lus10038274.g ID=Lus10038274.BGIv1.0 annot-version=v1.0 ATGGAGCAAAATCTACAGTTGATGACGAAGAAAGCATGGGGGATCGTACGGGTGTTATTCTTCATGCTGAGGAAGGGAATTATCTCCAAGCGAAAGCTCC TCCTAGATCTCAACATGGTTATGAAGCGCGGCAACAAAATCGCCTCCAAGGCCATCGGCAACTTCCTCATCTTCAACCACCACCATTCCTCATCCCCCCC ACCTGATGCTTACGAGTTCAGCTGCACCAACACCCCTAACTACACCTCCCACCTCCCCACCACCAAACGCAGCTTCTTCTCCTGTGTATTCCACGCTCCC CCCACCAAGCACGACGACCACGACGATGACCTGGCCTCCGTCAACGCCGTCAAGATGGCCCTCGACATGTTCAACTACAACAACAATACTAGTAATAGTA GTAATAATAATATTGTCTACGCCCCGTCGCCAATGCTGCCCGGGTTCGGGAAGAGTCCCGTGGGGAGACAGCTGAGGATAACGGACTCGCCGTTCCCGTT AAGGGAAGAGGACCATGGAGATAACGGCGTCGTTGACCAGAAGGCTGGCGAGTTCATTGCCAATTTCTATAGGGAGCTTCAGAAGCAACGTGGAATCATG GACTGA
AA sequence Show only first row Show all	>Lus10038274 pacid=23158385 polypeptide=Lus10038274 locus=Lus10038274.g ID=Lus10038274.BGIv1.0 annot-version=v1.0 MEQNLQLMTKKAWGIVRVLFFMLRKGIISKRKLLLDLNMVMKRGNKIASKAIGNFLIFNHHHSSSPPPDAYEFSCTNTPNYTSHLPTTKRSFFSCVFHAP PTKHDDHDDDLASVNAVKMALDMFNYNNNTSNSSNNNIVYAPSPMLPGFGKSPVGRQLRITDSPFPLREEDHGDNGVVDQKAGEFIANFYRELQKQRGIM D

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16330			unknown protein		Lus10038274 [exp]	0	1
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	1.0	0.9610
AT1G52140			unknown protein		Lus10025828 [exp]	2.2	0.9481
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	2.8	0.9576
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10029787 [exp]	2.8	0.9348
AT1G63310			unknown protein		Lus10033253 [exp]	3.5	0.9511
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10000802 [exp]	3.7	0.9209
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	3.7	0.9395
					Lus10033847 [exp]	5.3	0.9509
					Lus10018997 [exp]	5.5	0.9438
AT5G66440			unknown protein		Lus10042306 [exp]	7.1	0.9188

Compare expression of checked genes

Lus10038274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.