Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25760 163 / 2e-45 Protein kinase family protein (.1.2) AT3G13670 151 / 4e-41 Protein kinase family protein (.1) AT5G18190 145 / 9e-39 Protein kinase family protein (.1) AT3G03940 144 / 1e-38 Protein kinase family protein (.1) AT3G03930 75 / 2e-15 protein kinase-related (.1) AT4G08800 64 / 1e-11 Protein kinase superfamily protein (.1) AT3G23340 46 / 2e-05 CKL10 casein kinase I-like 10 (.1) AT2G19470 46 / 2e-05 CKL5 casein kinase I-like 5 (.1) AT4G28540 45 / 4e-05 CKL6, PAPK1 casein kinase I-like 6 (.1) AT1G03930 45 / 4e-05 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025827 [exp] 201 / 3e-59 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10014152 [exp] 153 / 1e-41 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 152 / 2e-41 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10042455 [exp] 150 / 1e-40 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10013737 [exp] 149 / 2e-40 AT3G13670 979 / 0.0 Protein kinase family protein (.1) Lus10005479 [exp] 149 / 2e-40 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10039203 [exp] 146 / 3e-39 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 145 / 6e-39 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10024261 [exp] 144 / 2e-38 AT3G03940 961 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G236600 [exp] 169 / 5e-48 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.018G046400 [exp] 170 / 8e-48 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.001G189100 [exp] 160 / 5e-44 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G215700 [exp] 157 / 3e-43 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.003G049700 [exp] 157 / 5e-43 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.001G009700 [exp] 156 / 8e-43 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.019G034500 [exp] 154 / 7e-42 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.013G047200 [exp] 45 / 4e-05 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.018G041000 [exp] 45 / 4e-05 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1) Potri.010G070400 [exp] 45 / 4e-05 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038275 pacid=23158473 polypeptide=Lus10038275 locus=Lus10038275.g ID=Lus10038275.BGIv1.0 annot-version=v1.0 ATGATCAAGGTTCAGGTTGGAGGTCCTCCGTTGTACAGAGTAGAACAGAAGTTGGGGAAAGGAGGCTTTGGTCAAGTATATGCTGGTCGACGTTCTGGTG CAGTTAATACGGGCGAGAGAACTGGTCCAGGGGCTATGGAGGTGGCATTAAAATTTGAGCATCGAAGTAGTAAAGGATGTAATGAGGGACCGCCATCTGA ATGGCAGACTTACAGGTCTATAGAAATGGTTGCATGTATCGCAACTGAAGCAATATCCATATTGGAAAGGATGCACTCTAAGGGTTATGTCCATGGAGAT GTTAAGCCTGAGAATTTCTTGCTTGGTCAATCGGGGACTTCTGAGGAGAAGAAGCTTTTCCTTGTTGATCTTGGATTAGGTAAGTTGGGAGTCTTTCTCT TTGTTGGACTGAATCCAAGTGGGCGGCCAATTAACAGAGAGGGTGATCAGAAGCTCATTTGTCAGGTTGATCAGAAAAGAGGACGGTTAACCATGGAGGA TGATGAGGATGAACAACCTAAGAAGAAAATTCGTATCGGCATGCCTGCTAGTCAATGGATCAGTGTAGACAGTGCTCGCAGGCCCATGAAGCAGAGGGAT TACATGAAACGCGGGTTTGTGAATTTGAGAAGTTTGTGTTCATATGATTTTGTTGGTATCGTTATAATGTTGGCGAGACAAGGTTGGCTCATCATATTGA AAAAGGAAATGAAGATGGATTATACATTAGCAGCGTTGCTTCAGCTCAAAATTTATGGGCACTCATCATGGATGCTGGTACTGGTGTTACTTCACAAAGT CTACCAGCTCTCACCGCAATTTCTAAATAAGGAATGGATAATGGAGAACTGGGAGAAGAGCTATTACATCAGTGCCATAGCTGGATCTACGAATGGAGGC TCATTCGTTGTGATGTCCAAGGGTCAGCATCGATGA
AA sequence Show only first row Show all	>Lus10038275 pacid=23158473 polypeptide=Lus10038275 locus=Lus10038275.g ID=Lus10038275.BGIv1.0 annot-version=v1.0 MIKVQVGGPPLYRVEQKLGKGGFGQVYAGRRSGAVNTGERTGPGAMEVALKFEHRSSKGCNEGPPSEWQTYRSIEMVACIATEAISILERMHSKGYVHGD VKPENFLLGQSGTSEEKKLFLVDLGLGKLGVFLFVGLNPSGRPINREGDQKLICQVDQKRGRLTMEDDEDEQPKKKIRIGMPASQWISVDSARRPMKQRD YMKRGFVNLRSLCSYDFVGIVIMLARQGWLIILKKEMKMDYTLAALLQLKIYGHSSWMLVLVLLHKVYQLSPQFLNKEWIMENWEKSYYISAIAGSTNGG SFVVMSKGQHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25760			Protein kinase family protein ...		Lus10038275 [exp]	0	1
AT1G05510			Protein of unknown function (D...		Lus10021483 [exp]	1.7	0.8617
AT2G47880			Glutaredoxin family protein (....		Lus10005937 [exp]	5.3	0.7435
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10004370 [exp]	7.7	0.7263
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	12.8	0.7279
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10029947 [exp]	19.2	0.7544
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	20.5	0.6521
					Lus10037041 [exp]	22.4	0.7927
AT5G18910			Protein kinase superfamily pro...		Lus10012776 [exp]	25.0	0.6313
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10042091 [exp]	25.8	0.6640
					Lus10035963 [exp]	29.5	0.6882

Compare expression of checked genes

Lus10038275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.