Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15215 266 / 3e-89 SHH1, DTF1 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein AT3G18380 184 / 4e-56 SHH2 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025826 [exp] 509 / 0 AT1G15215 236 / 1e-77 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10014151 [exp] 224 / 8e-72 AT1G15215 224 / 5e-72 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10017944 [exp] 187 / 2e-57 AT3G18380 418 / 7e-147 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10013684 [exp] 187 / 3e-57 AT3G18380 416 / 4e-146 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10037564 [exp] 131 / 3e-37 AT1G15215 130 / 2e-37 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Lus10005480 [exp] 114 / 2e-31 AT3G18380 115 / 7e-32 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Lus10006038 [exp] 42 / 5e-05 ND 40 / 1e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189200 [exp] 291 / 2e-99 AT1G15215 259 / 3e-87 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.018G046200 [exp] 212 / 2e-68 AT1G15215 195 / 4e-62 SAWADEE homeodomain homolog 1, DNA-binding transcription factor 1, unknown protein Potri.011G097500 [exp] 186 / 3e-57 AT3G18380 366 / 1e-126 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.001G373300 [exp] 172 / 6e-51 AT3G18380 369 / 7e-127 SAWADEE homeodomain homolog 2, sequence-specific DNA binding transcription factors;sequence-specific DNA binding (.1.2.3) Potri.002G216900 [exp] 44 / 0.0001 AT4G25330 87 / 9e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038276 pacid=23158293 polypeptide=Lus10038276 locus=Lus10038276.g ID=Lus10038276.BGIv1.0 annot-version=v1.0 ATGGAACCCAGTCATCAGTCACTGACGACCTACGACCACCATTCAGCGTTTCGTCAGCGGCTGCAGCCAGCCTCGGATGACGATGATTTTGAATTTACTC TTGCTGAGATGATGAAAATGAAGAACATATACAAGCAGATAGGGAAAGAGGCATTAGCTCCTCAGTTTTGCCAAAACCTTGCCTCGAGTTTTAGTGAATC ACCAAATAGAATTGGGAAGCCAGCCATAACTTGGCAGCAGGTGCATAATTGGTTCCTCGGCAGACATAAGCCATCTGAAGCTACACCGTCGCCTACGCCT CTCAAATTCTGCATCGACCTGTCAGATCATACTAGGATGGGGAATATTGTACTACCAGTAAGCTTAACGAAGCATAAAGGTGCAGAGGCTAGCGATCTCT CTGAGTTGATGTATGAAGTTAAATCTTCGAAAGACTATGCTTGGTATGATCTTGCGTCATTCCTCAATTACAGAGTTCTTTGTTCTGGTGAGCTTGAGGT GCGAGTGCGTTATGCTGGGTACCGCAATACGGATGATGAATGGGTGAATCTGAAGAGAGCTGTGCGTGAAAGATCTATACCTCTAGAGCCCTCAGAATGT CACAAGGTCGAAGTTGGAGATCTTGTACTGTGCTTCCGGGAAAGATACGAGCAGGCAGTGTATTATGACGCTCATGTGGTGGAGATCCGAAGGCAAATGC ATGATTCGGAGGGCTGCAAGTGCATCTTCCTTGTCCGATATGACATTGATCATGTTGAGGATAAAGTTGGGTTAGAGTGGATATGTCGGAGGCCTGAGGG CGAGAGAAACAATGGCAAGGAATTAGAACTACCTCCCAAAAGCATCTTCTTCTAG
AA sequence Show only first row Show all	>Lus10038276 pacid=23158293 polypeptide=Lus10038276 locus=Lus10038276.g ID=Lus10038276.BGIv1.0 annot-version=v1.0 MEPSHQSLTTYDHHSAFRQRLQPASDDDDFEFTLAEMMKMKNIYKQIGKEALAPQFCQNLASSFSESPNRIGKPAITWQQVHNWFLGRHKPSEATPSPTP LKFCIDLSDHTRMGNIVLPVSLTKHKGAEASDLSELMYEVKSSKDYAWYDLASFLNYRVLCSGELEVRVRYAGYRNTDDEWVNLKRAVRERSIPLEPSEC HKVEVGDLVLCFRERYEQAVYYDAHVVEIRRQMHDSEGCKCIFLVRYDIDHVEDKVGLEWICRRPEGERNNGKELELPPKSIFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	0	1
AT5G44000			Glutathione S-transferase fami...		Lus10038943 [exp]	3.2	0.7701
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003515 [exp]	3.7	0.7801
AT2G26840			unknown protein		Lus10036059 [exp]	7.1	0.7735
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10015065 [exp]	8.7	0.7378
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	8.9	0.7720
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10029347 [exp]	9.8	0.7981
AT1G30290			Tetratricopeptide repeat (TPR)...		Lus10010585 [exp]	11.7	0.7602
AT1G19240			unknown protein		Lus10034891 [exp]	12.0	0.7431
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10022758 [exp]	12.5	0.7417
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10013548 [exp]	13.2	0.7611

Compare expression of checked genes

Lus10038276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.