Plant FIBer expression Database

Lus10038277 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79760 169 / 3e-49 DTA4 downstream target of AGL15-4 (.1)
AT2G38500 69 / 1e-12 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
AT1G80330 49 / 4e-06 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1)
AT2G44800 43 / 0.0003 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025825
[exp]
692 / 0 AT1G79760 176 / 9e-52 downstream target of AGL15-4 (.1)
Lus10014134
[exp]
46 / 4e-05 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2)
Lus10006709
[exp]
45 / 6e-05 AT4G22880 573 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G189400
[exp]
355 / 8e-121 AT1G79760 170 / 4e-50 downstream target of AGL15-4 (.1)
Potri.011G047800
[exp]
340 / 3e-114 AT1G79760 103 / 1e-24 downstream target of AGL15-4 (.1)
Potri.016G134500
[exp]
75 / 1e-14 AT2G38500 244 / 1e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.012G006300
[exp]
50 / 2e-06 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.010G231500
[exp]
47 / 2e-05 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.008G029700
[exp]
42 / 0.0007 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10038277 pacid=23158420 polypeptide=Lus10038277 locus=Lus10038277.g ID=Lus10038277.BGIv1.0 annot-version=v1.0
ATGGAAGCTTCACCACATTCCATCCCAGAAACTCACCACGTTGATTTCAGAGCTCCACCCCCTTCTCCGATCGCGTCAGGGAGGCGATCGTCCTTCGCCA
ACGATACTGTCCTCACCGAATATCTAGAGAACTCGTTGCGAGTCCCGGACTTGATCCTTCCTGACAGAATATTCCCCAGCCAGAAGATCCTTGAAACACC
TCAAGTGGTTGATTTCCAGTCACTGCAAAATGGCGATTTCACTCGTCGGTTGGGATGTGATATGGATCGCCTGGCCAGATTGGGGTGCTTCCAACTTGTC
AACCATGGGATTTCTAGTGAATCCGTGATGTCAGCCATGGATTTAGCTCAGTACATCTTCAATGTTCCCGTGGAGAAAAGGGCAATGGTGATGGTGTCTA
CAGAAAAACCCTATGGGTTTGAGGAGGAGATCATCCAGCACGGTGATGATGATGATAAGGAAGAGATTATTAGCAACAGTTGGAGTGAAGAATTCGTTTG
GTGTAGAGATGAAAGCTTGAGGTTGGAGATGGAGGCAATTTTGGGTGATAGCTACTCCAAATTCAGTGTCAAAATGGAAGCTCTGATGTCCAACATAGAG
GCAGTGGGTGAAAGGCTGCTAGGAGTTGTGAGGCAAGAGATGATGAAGTTGGAAAGTCCGGCAAATGATCATCAAAATGAAATGGTGATGCAGCTGGATG
AGGAGGAGGAGGATAAGGATGACCTGGGTCGAGTTGCGGAACTATCGAGTTGCTGCTACCTTCGAAAGCACCGGAGAAATGTTCCGGCGGAGAGGTGGGA
GAGATCACTTAGGTATGATGTGATAAAGATGCTGATAAGAGGCAGTGATCACTCTCATGCCTTGTGCTTTCACATTTGCAATGCCTCATCCTCAGAGTTT
CATGTTTACTCCAAGAAAGGTTGGATTTCTTTCTCCCCTGAGAAAGATGCTCTGGTTGTCACAATTGGAGATCAAATTCAGGCTATGAGCAACAGACATG
TGCTAGGGAGGCCAATGGTTAAAAGTGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACAGTCCTAACTCGACTTCAATGGCGTTTATGTATTCTCC
TCCACCACCCACCATCAACAGTAGTGGTAATAATCAAATGAAAGAGGAAATTACTATTTCAATCAAACAACAAGCGATGGTAGCCCTTGTCTTCTCTCTT
GTTTGCCAATTTTTGGCTTTTCTTTATAAATTCTTTTAA
AA sequence
>Lus10038277 pacid=23158420 polypeptide=Lus10038277 locus=Lus10038277.g ID=Lus10038277.BGIv1.0 annot-version=v1.0
MEASPHSIPETHHVDFRAPPPSPIASGRRSSFANDTVLTEYLENSLRVPDLILPDRIFPSQKILETPQVVDFQSLQNGDFTRRLGCDMDRLARLGCFQLV
NHGISSESVMSAMDLAQYIFNVPVEKRAMVMVSTEKPYGFEEEIIQHGDDDDKEEIISNSWSEEFVWCRDESLRLEMEAILGDSYSKFSVKMEALMSNIE
AVGERLLGVVRQEMMKLESPANDHQNEMVMQLDEEEEDKDDLGRVAELSSCCYLRKHRRNVPAERWERSLRYDVIKMLIRGSDHSHALCFHICNASSSEF
HVYSKKGWISFSPEKDALVVTIGDQIQAMSNRHVLGRPMVKSGEEEEEEEEEEDSPNSTSMAFMYSPPPPTINSSGNNQMKEEITISIKQQAMVALVFSL
VCQFLAFLYKFF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G79760 DTA4 downstream target of AGL15-4 (... Lus10038277
[exp]
0 1
AT1G12840 ATVHA-C, DET3 DE-ETIOLATED 3, ARABIDOPSIS TH... Lus10035159
[exp]
8.2 0.7661
AT1G78110 unknown protein Lus10012052
[exp]
16.0 0.7101
AT5G40650 SDH2-2 succinate dehydrogenase 2-2 (.... Lus10014573
[exp]
16.7 0.7480
AT3G07810 RNA-binding (RRM/RBD/RNP motif... Lus10038806
[exp]
17.0 0.7499
AT1G08190 ZIP2, ATVPS41, ... ZIGZAG SUPPRESSOR 2, vacuolar ... Lus10005352
[exp]
20.7 0.7313
AT1G78110 unknown protein Lus10027930
[exp]
25.3 0.6827
AT3G28715 ATPase, V0/A0 complex, subunit... Lus10030672
[exp]
25.6 0.7265
AT1G30630 Coatomer epsilon subunit (.1) Lus10023385
[exp]
26.6 0.7321
AT2G33470 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFE... Lus10011806
[exp]
30.4 0.7172
AT5G14390 alpha/beta-Hydrolases superfam... Lus10022307
[exp]
32.7 0.5942

Lus10038277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.