Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79750 569 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT5G11670 520 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT5G25880 510 / 7e-178 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT2G19900 509 / 1e-177 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT2G13560 260 / 3e-80 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 249 / 2e-76 NAD-ME2 NAD-dependent malic enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025823 [exp] 755 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10014149 [exp] 569 / 0 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10037561 [exp] 562 / 0 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10006036 [exp] 524 / 0 AT5G11670 696 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10012964 [exp] 494 / 4e-172 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10011125 [exp] 479 / 3e-166 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10043025 [exp] 482 / 4e-166 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005484 [exp] 467 / 1e-161 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005483 [exp] 417 / 4e-143 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G049300 [exp] 563 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 553 / 0 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G086700 [exp] 548 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.006G236500 [exp] 517 / 1e-180 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G046600 [exp] 510 / 3e-178 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.002G135300 [exp] 265 / 6e-82 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G043700 [exp] 263 / 3e-81 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G156000 [exp] 256 / 5e-79 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 254 / 3e-78 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10038278 pacid=23158338 polypeptide=Lus10038278 locus=Lus10038278.g ID=Lus10038278.BGIv1.0 annot-version=v1.0 ATGATCTCCCTCACTCGAACCAGCTTCCTGTTGAATGAATGTAGGAATGTGAAATTTTATGCTGTAGTTTCTTTTTTCCCTGTGGTGCAGAATAACATCT CAGGTACTTCCGGCCGTTATTCAGACAGGCTTGTCCTGAAACATCCTTGTTCATTGAAGGTAAAGATTGCGGCCAACCGGGACAGAAACGGCAGCGTATT AGCTATCGATACAGTGGTTAAAGAGATGGCGGCTTCTGTGATCGATGATTCCGAGCCCACAGTTGCTGGTGGCACACGTGATGCCTACGGTGAGGATACT GCCACCGAGGACCAGCCTATCACTCCATGGTCTGTCTCAGTTGCTAGTGGATACTCCCTGATGCGAGATCCTCGTCACAACAAAGGTCTGGCCTTCACTG AAAAGGAGAGAGATGCCCACTTTCTGCGTGGTCTTCTCCCGCCATCAATTGCTTCTCAGGATCTCCAGGTGAAGAAACTGATGCATATTCTTAACCAGTA CGAAGTGCCACTGCAGAAGTACATGTATATGATGGATCTCCAGGAAAGAAATGAGCACCTGTTCTATAAACTTCTTATGGAGCATGTAGAGGAGATGCTC CCCATTGTCTACACTCCAACTGTGGGCGAGGCTTGTCAGAAATATGGAAGCATCTTCAGTCGACCTCAGGGTCTCTACATCAGCTTGAAGGAGAAGGGTA GGATCCTTGAGGTTCTAAGGAACTGGCCTGAGAAAAATATTCAAGTTATTGTTGTCACTGATGGTCAGCGGATTTTGGGACTTGGAGATCTTGGATGCCA GGGTATGGGAATACCAGTTGGAAAACTCTCACTTTATACAGCCCTTGGTGGAGTTCGTCCTTCAGCTTGCTTGCCTATTACTATTGATGTGGGTACAAAC AATGAAAAGTTGTTGAATGATGAGTTCTACATAGGGCTCAAGCAAAAACGGGCAACTGGACAGGAATATTCTGAATTACTGCATGAATTCATGACTGCTG TGAAGCAGAACTATGGAGAGAAAATCCTTGTTCAGTTTGAAGACTTTGCAAATCACAATGCATTTGATCTACTTGCAAAATATGGTACGACACATCTTGT ATTCAATGATGACATTCAGGCAAACAATGCATACATTTTCCCTGGTCTGGGTCTGGGCTTGATTATGTCTGGTACCATTCGCGTCCATGACGATATGCTT CTTGCAGCTTCGGAAGCATTGGCTGGGCAGGTGAGTCAAGAGAACATGGACAATGGACTGATATACCCACCATTCACAAACATTAGGAAGATTTCAGCTC ATATTGCTGCCAATGTGGCTGCGAAGGGATAA
AA sequence Show only first row Show all	>Lus10038278 pacid=23158338 polypeptide=Lus10038278 locus=Lus10038278.g ID=Lus10038278.BGIv1.0 annot-version=v1.0 MISLTRTSFLLNECRNVKFYAVVSFFPVVQNNISGTSGRYSDRLVLKHPCSLKVKIAANRDRNGSVLAIDTVVKEMAASVIDDSEPTVAGGTRDAYGEDT ATEDQPITPWSVSVASGYSLMRDPRHNKGLAFTEKERDAHFLRGLLPPSIASQDLQVKKLMHILNQYEVPLQKYMYMMDLQERNEHLFYKLLMEHVEEML PIVYTPTVGEACQKYGSIFSRPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGQRILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTN NEKLLNDEFYIGLKQKRATGQEYSELLHEFMTAVKQNYGEKILVQFEDFANHNAFDLLAKYGTTHLVFNDDIQANNAYIFPGLGLGLIMSGTIRVHDDML LAASEALAGQVSQENMDNGLIYPPFTNIRKISAHIAANVAAKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	0	1
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10025823 [exp]	2.0	0.8644
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	3.2	0.8853
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	3.7	0.8819
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	4.6	0.8744
AT3G07210			unknown protein		Lus10038194 [exp]	5.0	0.8554
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	5.5	0.8426
AT5G63410			Leucine-rich repeat protein ki...		Lus10029659 [exp]	6.7	0.8180
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10028855 [exp]	7.1	0.8324
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10027336 [exp]	11.3	0.8368
AT3G44510			alpha/beta-Hydrolases superfam...		Lus10004879 [exp]	11.4	0.7078

Compare expression of checked genes

Lus10038278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.