Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16360 200 / 3e-67 AHP4 HPT phosphotransmitter 4 (.1.2) AT3G21510 109 / 3e-31 ATHP3, AHP1 histidine-containing phosphotransmitter 1 (.1) AT3G29350 98 / 9e-27 ATHP1, AHP2 histidine-containing phosphotransmitter 2 (.1.2) AT1G03430 96 / 1e-25 AHP5 histidine-containing phosphotransfer factor 5 (.1) AT5G39340 96 / 1e-25 ATHP2, AHP3 ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2, histidine-containing phosphotransmitter 3 (.1) AT1G80100 74 / 3e-17 AHP6 histidine phosphotransfer protein 6 (.1.2) AT5G19710 55 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025821 [exp] 263 / 5e-92 AT3G16360 226 / 4e-77 HPT phosphotransmitter 4 (.1.2) Lus10012777 [exp] 100 / 1e-27 AT3G21510 216 / 5e-73 histidine-containing phosphotransmitter 1 (.1) Lus10033999 [exp] 100 / 3e-27 AT3G21510 216 / 3e-73 histidine-containing phosphotransmitter 1 (.1) Lus10000926 [exp] 98 / 2e-26 AT3G21510 181 / 3e-59 histidine-containing phosphotransmitter 1 (.1) Lus10002256 [exp] 96 / 6e-26 AT3G21510 154 / 3e-49 histidine-containing phosphotransmitter 1 (.1) Lus10003256 [exp] 87 / 2e-22 AT1G03430 105 / 1e-29 histidine-containing phosphotransfer factor 5 (.1) Lus10035596 [exp] 85 / 2e-21 AT3G16360 103 / 5e-29 HPT phosphotransmitter 4 (.1.2) Lus10023127 [exp] 84 / 7e-21 AT1G80100 178 / 5e-58 histidine phosphotransfer protein 6 (.1.2) Lus10011487 [exp] 84 / 1e-20 AT1G80100 194 / 6e-64 histidine phosphotransfer protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189900 [exp] 214 / 2e-72 AT3G16360 239 / 1e-82 HPT phosphotransmitter 4 (.1.2) Potri.018G046800 [exp] 168 / 2e-54 AT3G16360 170 / 3e-55 HPT phosphotransmitter 4 (.1.2) Potri.006G236300 [exp] 168 / 2e-54 AT3G16360 199 / 1e-66 HPT phosphotransmitter 4 (.1.2) Potri.008G197600 [exp] 110 / 1e-31 AT3G21510 193 / 3e-64 histidine-containing phosphotransmitter 1 (.1) Potri.016G113500 [exp] 110 / 2e-31 AT1G03430 210 / 1e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.010G027100 [exp] 108 / 1e-30 AT3G21510 206 / 5e-69 histidine-containing phosphotransmitter 1 (.1) Potri.005G040400 [exp] 107 / 1e-30 AT3G21510 181 / 1e-59 histidine-containing phosphotransmitter 1 (.1) Potri.006G098200 [exp] 107 / 3e-30 AT1G03430 207 / 7e-70 histidine-containing phosphotransfer factor 5 (.1) Potri.013G028300 [exp] 106 / 5e-30 AT3G21510 183 / 2e-60 histidine-containing phosphotransmitter 1 (.1) Potri.014G136200 [exp] 98 / 7e-27 AT1G03430 163 / 2e-52 histidine-containing phosphotransfer factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01627 [flax] [poplar] Hpt Hpt domain
Representative CDS sequence Show only first row Show all	>Lus10038280 pacid=23158239 polypeptide=Lus10038280 locus=Lus10038280.g ID=Lus10038280.BGIv1.0 annot-version=v1.0 ATGGACAGAATACACAGGCAGGTGGCCATGATGAAGCAGTCCCTGTTTGAGCAGGGATATCTGGATGAAGAACAGTTGGCCCAGCTGGAGGAACTGAAGG ACGATGCTAACCCAAATTTCGTGGAGGAAGTTGTGACATTGTATTACAGAGATTCGGCCAGACTTGTGTTCAACATTGAGCAACTTCTGGAGAAAAGACC CCTTGATTTCAACAAGTTGGATACCTGCATGCATCAGTTCAAAGGAAGCAGCTCCAGCATTGGAGCCAACAGGGTGAAAGCAGAGTGCGCTGTGTTTAGG GAATATTGCAGAGCAGGAAATGGAGAAGGATGCATAAGGACATTCCAGCTGGTGAAGAAAGAATATACAACACTCAGGAAGAAGCTCGAGACTTATTTTC AGCTGGCAAGGCAAGCCGGACCTATTCAGACAGCATGCCGCCCCAAGTGA
AA sequence Show only first row Show all	>Lus10038280 pacid=23158239 polypeptide=Lus10038280 locus=Lus10038280.g ID=Lus10038280.BGIv1.0 annot-version=v1.0 MDRIHRQVAMMKQSLFEQGYLDEEQLAQLEELKDDANPNFVEEVVTLYYRDSARLVFNIEQLLEKRPLDFNKLDTCMHQFKGSSSSIGANRVKAECAVFR EYCRAGNGEGCIRTFQLVKKEYTTLRKKLETYFQLARQAGPIQTACRPK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10038280 [exp]	0	1
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	2.2	0.9317
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10009582 [exp]	3.9	0.9209
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	4.5	0.9218
AT3G25290			Auxin-responsive family protei...		Lus10000915 [exp]	9.2	0.9112
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	9.2	0.8481
AT5G36930			Disease resistance protein (TI...		Lus10007814 [exp]	10.7	0.9030
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10034869 [exp]	10.7	0.9017
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	12.0	0.8978
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10030216 [exp]	13.0	0.8645
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	16.4	0.8815

Compare expression of checked genes

Lus10038280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.