Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12540 215 / 4e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025820 [exp] 911 / 0 AT4G12540 228 / 6e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G053300 [exp] 392 / 1e-131 AT4G12540 246 / 5e-76 unknown protein Potri.013G040800 [exp] 380 / 7e-127 AT4G12540 231 / 4e-70 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038281 pacid=23158134 polypeptide=Lus10038281 locus=Lus10038281.g ID=Lus10038281.BGIv1.0 annot-version=v1.0 ATGTCGAGAAACGAAGCTACTAGTGCCAAACAGACTTTCACGAGAAGGCCATTACGAGAGCTATCGAATATCCACAGCCGCTTTGGCGCCGGAGGCGGCG ACAGTGTCACCTGCGTCGGAAACAGAGGAGTTCCAGTCTGCAAGTCGATGGTGGCCAAAAAGATCGCACCGCGAAGTTCAACTTGTATTGAAGAAATGAA AGAAGACGATGACGATTGTCTTGATCGTCTGCTGGCCGTCCACTCCGATCTCTCCTCCCTCACTCGTCAGATTGACGATCTTGTTGCGCGAACATTCAAG CTGAAATCTGCTGGTAAAGATGGGTGGCGAGAAATTGAATCGTTTTCTCATTTTTTATCCGATACGCTTTCTTATTTCAAGCCTTGGGTGTTAAGATTTG AGAAGGCACTCGCCACTCCTAGCTTGGAGATGGAGAATCAGGCACAGGGAACTCCGGCACAGAAACCCGCTTCTGCTGTAAACGAAGGATGTTTGGACGA TGGAAGTCCAGAGGAAAACGAGATGGACACTTTGATATCTCCTTCCCCTCTTGTTTCCTGGCGAAAAGATTATAACATTGACAGGAGCCGGCAGTTGTTT CTCCTTACACCTCTCCCAATATCAAAAACATTATCAATCAAACGACGGGAGTTGTCTGCAAGAGTATTGGAAAACATGGTTCCTGGTTCCAGAACGGAGC CGTCATCATTTTTGGCAATCTCTGGAGATGACAATGATGATTTGCTTGAAGGTACGACGATGAACACAACTCCAAGTAAGCCTTGTGGTGATTCTGCTGC CCCAGAAATGAAAAACAACAACGAGTGTGGGTTAGACTTTTCCACGCCCATGACTACTTCAAAGAGAGACCATCCTTCCACGATGGTTATGACGCCGTGC TTAAAGATGTCCCCTCCAAAATCTTGCTTTTTGCTTGAACCAATAGCTGAGATGCCTCACAAAATCAATTGCTGCAATCGACAATCGACTCCGTACCCAG TTGGCATACATTCACAGATGTCGGAGCCTGAATCTTCTGGAAGTGAAGGTTACGAGGATCTGGGGGTTAGGTACCCTGAACTATTGGGTATTCAATGGGC TTGCAAATCTGGAATGGGAAACAAAGATTTGGAAAAGTCACCAGACTGGAAGTTTTCTCCTCCAAAAACTTGTGTTCTGTTGCAACCTTCTGATGAGAAT TCAATGGTTGATGTCCATCCCATTGACCTCAACTTGCTACCAAACCAAGTGCAAAAAGATGATGCTCAAGTCGAAAGACCTATCAATCAAGAGCCTGCAG GTAGTAGCTTTGAGAAAGTGGTAAGCACTCCCGCATGGAAAGGCGCTGAAAGCACAGTAAGAAGAGGAGGTAAGCATCCGGGAGAGAACACTTTGAAAAG GGAGCTGTGGACTAAGTTCGAAGCAGTCACCACTTGTGGAGTTGGATTGAATGCCTCTGCCATAGTAAGTAGCTCAGGGAAAGGGTTTATGGATATGCTC GATGAAGTTTCTTGTGAAGAGCAAACCAGAGTGGACACAAGTTGA
AA sequence Show only first row Show all	>Lus10038281 pacid=23158134 polypeptide=Lus10038281 locus=Lus10038281.g ID=Lus10038281.BGIv1.0 annot-version=v1.0 MSRNEATSAKQTFTRRPLRELSNIHSRFGAGGGDSVTCVGNRGVPVCKSMVAKKIAPRSSTCIEEMKEDDDDCLDRLLAVHSDLSSLTRQIDDLVARTFK LKSAGKDGWREIESFSHFLSDTLSYFKPWVLRFEKALATPSLEMENQAQGTPAQKPASAVNEGCLDDGSPEENEMDTLISPSPLVSWRKDYNIDRSRQLF LLTPLPISKTLSIKRRELSARVLENMVPGSRTEPSSFLAISGDDNDDLLEGTTMNTTPSKPCGDSAAPEMKNNNECGLDFSTPMTTSKRDHPSTMVMTPC LKMSPPKSCFLLEPIAEMPHKINCCNRQSTPYPVGIHSQMSEPESSGSEGYEDLGVRYPELLGIQWACKSGMGNKDLEKSPDWKFSPPKTCVLLQPSDEN SMVDVHPIDLNLLPNQVQKDDAQVERPINQEPAGSSFEKVVSTPAWKGAESTVRRGGKHPGENTLKRELWTKFEAVTTCGVGLNASAIVSSSGKGFMDML DEVSCEEQTRVDTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12540			unknown protein		Lus10038281 [exp]	0	1
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	3.6	0.9209
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	9.1	0.9190
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10036576 [exp]	10.4	0.8931
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	12.7	0.8558
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	13.4	0.8563
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012906 [exp]	14.0	0.8509
AT5G37010			unknown protein		Lus10007363 [exp]	17.1	0.8782
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032119 [exp]	19.0	0.8791
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	20.9	0.8861
AT3G58930			F-box/RNI-like superfamily pro...		Lus10002820 [exp]	22.8	0.8503

Compare expression of checked genes

Lus10038281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.