Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 355 / 1e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025819 [exp] 470 / 4e-169 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038283 [exp] 350 / 6e-122 AT3G21360 494 / 1e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025818 [exp] 350 / 2e-121 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037585 [exp] 295 / 4e-100 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006839 [exp] 283 / 3e-95 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006838 [exp] 280 / 3e-94 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006835 [exp] 265 / 3e-88 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017883 [exp] 171 / 2e-51 AT3G21360 247 / 2e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035053 [exp] 170 / 2e-51 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190100 [exp] 357 / 1e-124 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 195 / 3e-61 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131300 [exp] 189 / 1e-58 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10038282 pacid=23158219 polypeptide=Lus10038282 locus=Lus10038282.g ID=Lus10038282.BGIv1.0 annot-version=v1.0 ATGTCGTCGAAGCTTTCTGACTTCGAGGAGCTTCCTTACATCGGCGGGGCGGCTCCACGAAACATCGTCGTTGGCCGCGTGTTCACGGCGAACGACGCTC CGTCCGAGCACAAGATCACCTTCCACCATGAGATGTCCCAGCTGCCTGTCTACCCGACAAAGCTCTTCTTCTTCTGCGAGGTGGAGCCGGGAAGCCGGGG AGAGACCCCTTTGGTTCTCAGCCATGTAGTGTACGAGAGGATGAAGGACAAGTACCCCGAATTCGTGGAGAAGCTGGAAGAGCACGGTCTGATATACACG AGGATTGTCGGGGACGAAGATGATCCTTCGTCGACAATCGGTCGAGGGTGGAAATCAACCTTTTTAACGGACGACAAGGGGGTGGCGGAGGAAAGAGCAG AAAAGCTGGGGACGAGGTTGGAGTGGACGGAGGATGGAGGAGCGAAGACGGTGATGGGACCCATGGCTGGAGTGAAGGTAATTGAAGAAGAAGGGGAGAA GAAGAAGAAGAAGAAGACTTGGTTTAACATGTTGGTGGATGCTTACTTGTATTGGGATGACGCGAGAAATGATCGGCGGAAGGCGGTTACTTTCGGGGAT GGAGGGATTTTGCCAGAGGAGGTGGTGAGAGATTGCGAGAGGATATTGGAAGAGGAGAGCGTTGCTATTCCATGGAAGAAAGGTGATGTTTTGTTGTTGG ATAATAGGGCAGTGCTTCATGCTCGTAATCCCTTTGATCCCCCCAGAACGATTCTTGCTTCCCTCTGCAAGTAG
AA sequence Show only first row Show all	>Lus10038282 pacid=23158219 polypeptide=Lus10038282 locus=Lus10038282.g ID=Lus10038282.BGIv1.0 annot-version=v1.0 MSSKLSDFEELPYIGGAAPRNIVVGRVFTANDAPSEHKITFHHEMSQLPVYPTKLFFFCEVEPGSRGETPLVLSHVVYERMKDKYPEFVEKLEEHGLIYT RIVGDEDDPSSTIGRGWKSTFLTDDKGVAEERAEKLGTRLEWTEDGGAKTVMGPMAGVKVIEEEGEKKKKKKTWFNMLVDAYLYWDDARNDRRKAVTFGD GGILPEEVVRDCERILEEESVAIPWKKGDVLLLDNRAVLHARNPFDPPRTILASLCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	0	1
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021880 [exp]	1.4	0.9248
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	2.0	0.9234
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Lus10030484 [exp]	2.8	0.9103
AT2G38870			Serine protease inhibitor, pot...		Lus10014740 [exp]	3.0	0.9195
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10010310 [exp]	4.5	0.8919
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10035936 [exp]	5.3	0.8748
AT4G19460			UDP-Glycosyltransferase superf...		Lus10033297 [exp]	6.6	0.8623
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	7.3	0.8905
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10040222 [exp]	7.5	0.8393
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10028267 [exp]	8.3	0.8071

Compare expression of checked genes

Lus10038282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.