Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21360 495 / 9e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025818 [exp] 634 / 0 AT3G21360 496 / 6e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10025819 [exp] 440 / 9e-156 AT3G21360 428 / 2e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037585 [exp] 413 / 3e-145 AT3G21360 454 / 2e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006839 [exp] 408 / 2e-143 AT3G21360 435 / 3e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006838 [exp] 407 / 8e-143 AT3G21360 397 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006835 [exp] 373 / 1e-129 AT3G21360 375 / 4e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038282 [exp] 358 / 1e-124 AT3G21360 367 / 2e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017883 [exp] 228 / 1e-72 AT3G21360 247 / 2e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035053 [exp] 225 / 1e-71 AT3G21360 246 / 4e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190100 [exp] 507 / 0 AT3G21360 501 / 5e-180 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131200 [exp] 247 / 3e-80 AT3G21360 250 / 2e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G131300 [exp] 243 / 2e-78 AT3G21360 241 / 3e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02668 [flax] [poplar] TauD Taurine catabolism dioxygenase TauD, TfdA family
Representative CDS sequence Show only first row Show all	>Lus10038283 pacid=23158360 polypeptide=Lus10038283 locus=Lus10038283.g ID=Lus10038283.BGIv1.0 annot-version=v1.0 ATGGCGACGACTCTATTCAGCGAGGTGACACTCTCGCAGCAGAAACAATTCGATTCAATCTCTTTCCCAGCCGCAGTCACTCCAACTCCAAATTCTGATC CTAGTCCTACCCTAGATATCCTCACTTCCGCCGTAAAATCGGAGAAGCCTTTCCTCGAATCTCTCCTCCTCAAATCAGGGGCGATTCTTTTCAGGGGATT CCCTCTCACCTCGCCTTCCCACTTCAACGAATTCGTTGAATCCTTCGGATACGAGGAGCTCCCCTACGTCGGCGGAGCTGCCCCTCGTACAAACGTCGTT GGTCGGGTATTCACCGCCAATGAATTCCCTCCCGACCAGAAAATCCCTTTCCACCACGAGATGGCCCAGGTTCCGGAGTTCCCATCAAAACTCTTCTTCT TCTGCGAAGTGGAGCCTGGAAGCGGCGGGGAGACCCCAATTGTTCTTAGTCACGTTGTCTACCAAAAAATGAAAGGCAAATACCCGGAATTCGTCCAGCG GTTGGAAGAGCACGGGTTGATGTACACCAGAGTTTTGGGCGAGGAAGACAACCCTATGTCCCCAATTGGCCGTGGCTGGAAATCCACTTTCTTGACCAAT GACAAAGCCGTAGCCCAGGAAAGGGCTGCAAGGCTAGGAATGAAACTGGAATGGTTGGAGGATGACGGGGTGAAGACGGTAATGGGACCAGTTCCAGGAG TGAAGACGGACAAGTGTAGGAGTAATCGGAAGATATGGTTTAATAGCATGGTGGCAGCATACACTGGGTGGGAAGACGAGAGGAATGATCCAAAGAAGGC TGTTACATTTGGAGATGGGATGCAGTTGCCTAGCGACATCGTCTACGATTGTTTGAACATCCTAGAAGAGTCAAGTGTTGTCATCCCTTGGAAGAAAGGT GATGTTCTTCTTATAGATAACTGGGCTGTTCTTCATGCCCGAAAATCCTTCGACCCTCCTCGAAGGGTTCTAGCTTCCCTCGTCAAGTGA
AA sequence Show only first row Show all	>Lus10038283 pacid=23158360 polypeptide=Lus10038283 locus=Lus10038283.g ID=Lus10038283.BGIv1.0 annot-version=v1.0 MATTLFSEVTLSQQKQFDSISFPAAVTPTPNSDPSPTLDILTSAVKSEKPFLESLLLKSGAILFRGFPLTSPSHFNEFVESFGYEELPYVGGAAPRTNVV GRVFTANEFPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHVVYQKMKGKYPEFVQRLEEHGLMYTRVLGEEDNPMSPIGRGWKSTFLTN DKAVAQERAARLGMKLEWLEDDGVKTVMGPVPGVKTDKCRSNRKIWFNSMVAAYTGWEDERNDPKKAVTFGDGMQLPSDIVYDCLNILEESSVVIPWKKG DVLLIDNWAVLHARKSFDPPRRVLASLVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	0	1
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10040222 [exp]	1.0	0.8941
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10030102 [exp]	3.5	0.8561
AT5G58530			Glutaredoxin family protein (....		Lus10040949 [exp]	6.0	0.8082
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10025680 [exp]	6.0	0.8294
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Lus10002165 [exp]	7.7	0.8243
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	8.0	0.8201
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10013313 [exp]	8.2	0.7942
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	8.5	0.8524
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	8.8	0.8096
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	10.7	0.8236

Compare expression of checked genes

Lus10038283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.