Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16500 223 / 5e-72 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) AT1G51950 210 / 9e-67 AUX_IAA IAA18 indole-3-acetic acid inducible 18 (.1) AT5G25890 130 / 4e-37 AUX_IAA IAR2, IAA28 IAA-ALANINE RESISTANT 2, indole-3-acetic acid inducible 28 (.1) AT2G33310 126 / 1e-34 AUX_IAA IAA13 auxin-induced protein 13 (.1.2.3) AT4G29080 127 / 2e-34 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT1G04550 122 / 5e-33 AUX_IAA BDL, IAA12 indole-3-acetic acid inducible 12, BODENLOS, AUX/IAA transcriptional regulator family protein (.1.2) AT4G28640 119 / 5e-32 AUX_IAA IAA11 indole-3-acetic acid inducible 11 (.1.2.3) AT3G04730 117 / 2e-31 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT3G23050 114 / 4e-30 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT4G14550 111 / 4e-29 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038284 [exp] 550 / 0 AT3G16500 223 / 6e-71 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10025817 [exp] 494 / 2e-177 AT3G16500 231 / 1e-74 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10037587 [exp] 258 / 6e-85 AT3G16500 251 / 4e-83 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10006842 [exp] 253 / 6e-83 AT3G16500 226 / 3e-73 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Lus10023719 [exp] 137 / 4e-38 AT2G33310 223 / 4e-72 auxin-induced protein 13 (.1.2.3) Lus10014464 [exp] 134 / 1e-36 AT2G33310 231 / 4e-75 auxin-induced protein 13 (.1.2.3) Lus10019241 [exp] 127 / 2e-34 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 124 / 6e-33 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10039414 [exp] 120 / 3e-32 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190300 [exp] 326 / 2e-111 AT3G16500 235 / 3e-76 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.003G048100 [exp] 313 / 2e-106 AT3G16500 224 / 4e-72 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.018G057000 [exp] 211 / 3e-66 AT3G16500 192 / 3e-59 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.006G236200 [exp] 187 / 2e-57 AT3G16500 184 / 3e-56 indole-3-acetic acid inducible 26, phytochrome-associated protein 1 (.1) Potri.002G256600 [exp] 134 / 4e-37 AT4G28640 191 / 6e-60 indole-3-acetic acid inducible 11 (.1.2.3) Potri.010G065200 [exp] 130 / 1e-35 AT2G33310 243 / 4e-80 auxin-induced protein 13 (.1.2.3) Potri.013G041400 [exp] 128 / 2e-35 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.008G172400 [exp] 125 / 1e-33 AT2G33310 246 / 4e-81 auxin-induced protein 13 (.1.2.3) Potri.002G108000 [exp] 124 / 1e-32 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.002G044900 [exp] 120 / 1e-32 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10038285 pacid=23158446 polypeptide=Lus10038285 locus=Lus10038285.g ID=Lus10038285.BGIv1.0 annot-version=v1.0 ATGAACAGAAAGAGGGAAAGAAGAGATGAGTCGTCCCTGCTCTCTCTGGGATATTTCAACAATCATCATTACCACTATCTCCATCATCAACAAGCACCCA AAGTTTCGTCTCACGAGATACAACAAATAGGTTCTCCAGCAGCAGCATCATCATCCTCTGTGTGGTTTAATCAACAGCAGGCTCCACCATCTTCTTTTCT TCAGTTTCCAACAACAAAAACAGAAGCAGCAGACAAGCAGCAGAGCTTGTTGGGTACTGTGGCAAAGGAATCCTCACAGCCCTGTTGCACTAAAGTAGGA GCAGTAGACTTGCAGCAGAGTGTTGCAGAAAAGAAGGCGTTTTCACCTCCTCCTCCTGCAAATACAGCTGTCCTCAACACCTCTCAGAAAAGAACTGCTC CTGGGCCAGTGGTGGGTTGGCCTCCAATTCGTTCCTTTAGGAAGAACCTGGCGAGCGGGAGCAGCTTTTCAAAGCAGCAGCAGCAGCAGCCAGCAGTTAA TGAGTCAAAGAATGGAAACCCGAACAAGAAGGCTGGCAGTGAAAAACCAGTTCAAGTATGCAAGAAAGGATTGTTCGTTAAGATAAATATGGATGGTGTC CCAATTGGCAGGAAAGTTGACCTTACAGCCTATAACAGCTACCAAAGACTCTCCGTCGCTGTTGATGATCTTTTCAGAGGGCTTCTTGCAGGCCAGTCTC AAAGAGATCCCAATTGCGATGAAATGGTGAAGAAGCAAGAAGAGGAAGAGAAAGCAATTACAGGGTTATTTGACGGGAGTGGGGAATATACTCTTGTTTA TGAGGATAATGAAGGAGACAGGATGCTTGTCGGAGATGTCCCATGGCAGATGTTTGTATCTACGGTGAAGAGGCTTCGCGTTCTGAAGAGTTCTGAGGTT TCTGGTCTAACCCGTGAGTGA
AA sequence Show only first row Show all	>Lus10038285 pacid=23158446 polypeptide=Lus10038285 locus=Lus10038285.g ID=Lus10038285.BGIv1.0 annot-version=v1.0 MNRKRERRDESSLLSLGYFNNHHYHYLHHQQAPKVSSHEIQQIGSPAAASSSSVWFNQQQAPPSSFLQFPTTKTEAADKQQSLLGTVAKESSQPCCTKVG AVDLQQSVAEKKAFSPPPPANTAVLNTSQKRTAPGPVVGWPPIRSFRKNLASGSSFSKQQQQQPAVNESKNGNPNKKAGSEKPVQVCKKGLFVKINMDGV PIGRKVDLTAYNSYQRLSVAVDDLFRGLLAGQSQRDPNCDEMVKKQEEEEKAITGLFDGSGEYTLVYEDNEGDRMLVGDVPWQMFVSTVKRLRVLKSSEV SGLTRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038285 [exp]	0	1
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038284 [exp]	1.0	0.9418
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10023167 [exp]	3.7	0.7680
AT3G53540			unknown protein		Lus10025295 [exp]	9.4	0.7343
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10041255 [exp]	10.2	0.7409
AT4G34540			NmrA-like negative transcripti...		Lus10023558 [exp]	10.2	0.7168
					Lus10000961 [exp]	12.5	0.7204
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036889 [exp]	13.3	0.6872
AT3G55605			Mitochondrial glycoprotein fam...		Lus10030157 [exp]	26.6	0.7230
AT5G22790		RER1	reticulata-related 1 (.1)		Lus10043364 [exp]	30.2	0.6957
AT5G59100			Subtilisin-like serine endopep...		Lus10042555 [exp]	33.6	0.6949

Compare expression of checked genes

Lus10038285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.