Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29130 671 / 0 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 661 / 0 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT1G50460 432 / 5e-148 ATHKL1, HKL1 hexokinase-like 1 (.1) AT3G20040 417 / 4e-142 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1) AT1G47840 400 / 3e-135 HXK3 hexokinase 3 (.1) AT4G37840 328 / 4e-107 HKL3 hexokinase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037588 [exp] 803 / 0 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 781 / 0 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10025815 [exp] 739 / 0 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10012946 [exp] 624 / 0 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10024336 [exp] 487 / 4e-169 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10002041 [exp] 476 / 7e-165 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10005019 [exp] 464 / 4e-160 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10019038 [exp] 447 / 9e-154 AT1G50460 636 / 0.0 hexokinase-like 1 (.1) Lus10034980 [exp] 310 / 5e-102 AT2G19860 334 / 6e-113 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190400 [exp] 726 / 0 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.018G088300 [exp] 687 / 0 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.001G254800 [exp] 482 / 2e-167 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.005G238600 [exp] 478 / 5e-166 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.009G050000 [exp] 470 / 1e-162 AT1G50460 576 / 0.0 hexokinase-like 1 (.1) Potri.007G009300 [exp] 409 / 8e-139 AT4G37840 520 / 0.0 hexokinase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase CL0108 [flax] [poplar] Actin_ATPase PF00349 [flax] [poplar] Hexokinase_1 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10038287 pacid=23158308 polypeptide=Lus10038287 locus=Lus10038287.g ID=Lus10038287.BGIv1.0 annot-version=v1.0 ATGGAGAGGAAGGTGGTGGGCACAGTGGTGTGTGTGGCGGCCGTCGCCGGCGTAGTTGGCGCCGGACTGGTTCTCCGCAAGAAGATGCAGAAAGACGGCA AATGGGGGCGGGCGATGGAGATTGTCAAGGAGCTTGAAGAAAAATGTAGCACCCCAACTGCCAAGCTCAAGCAGGTCGCCGATGCCATGGTCGTAGAGAT GCATGCCGGTCTTGCCTCTGAAGGTGGAAGCAAGCTCAAGATGCTTATCAGCTACGTCGACAATTTGCCCACCGGTGATGAGTCAGGGCTGTATTATGCT TTGGACCTTGGAGGAACAAATTTCCGTGTGCTGAGGGTGCATTTAGGTGGCCGAAATGGTGGACTTGTTAGTCAGGAGTTTGCTGAGGTTCCGATCCCTC CCGAATTGATGACTGGAGCTTCTGATGAACTATTTGATTATATTGCAGCCGAGCTTACAAAATTTGTTGCTGAAGAAGGCGAAGAGCATGAGCTTCCACC GGGGAGAAAGAGAGAGTTAGGTTTTACATTTTCGTTCCCCGTTAATCAAACATCCATTGCTTCTGGGACTCTTGTTCGGTGGACAAAAGGGTTCTCGATC GATGAACTGGTTGGCCAAGATGTTGTTACAGAATTGACCAAAGCCATGAAGAGGCAGAATCTTGAAATGCATGTGTCAGCTCTGGTGAATGATACAGTGG GAACACTCGCTGGAGGGAGATACACCAACAAAGATGTTGATGCTGCTGTTATATTGGGTACAGGAACAAATGCTGCTTATGTTGAGCGAGCTCAAGCAAT ACCAAAATGGCATGGTGCACTACCTAAATCAGGAGAAATGGTTATCAATATGGAGTGGGGCAATTTTAAGTCATCACATCTTCCTATTACTGAGTATGAT AATGCACTCGATGTTGAGAGCTTAAACCCTGGTGAACAGATTTTTGAGAAGATTATTTCTGGCATGTATTTGGGAGAAATAGTACGCAGAGTTCTTCTGA AGATGGCCGAAGAAGCTTCCTTTTTTGGTGATACGGTGCCTTCGAAACTCAAAATCCCTTTTGTGCTGAGGACGCCTGATATGTCAGCAATGCACCATGA CACATCGTCGGATCTCAAAGTTGTAGCAACTAAATTGAAGGACATTCTGGAGATACCGAGTACGTCGCTGAAAGCGAGAAAGGTGATTGTTGAGGTATGC AACATAATTGCGACGCGTGGAGCTCGTCTTGCTGCTGCTGGAGTGGTAGCCATCTTGAGAAAGATGGGGAAGGACACAGTGAAGGAAGGAGGAGAAGTAG GGAAAACGGTGGTGGCGATGGATGGTGGGTTGTATGAGCACTACAATGAGTATAGCAAGTGCTTAGAGATCACCCTTCCAGAATTGCTTGGCGAGCAAGT ATCCAAAACCGTACAGATCGTGCATGCCAACGATGGATCGGGGATTGGAGCCGCTCTTCTTGCTGCCTCACATTCACAGTATCTTTGA
AA sequence Show only first row Show all	>Lus10038287 pacid=23158308 polypeptide=Lus10038287 locus=Lus10038287.g ID=Lus10038287.BGIv1.0 annot-version=v1.0 MERKVVGTVVCVAAVAGVVGAGLVLRKKMQKDGKWGRAMEIVKELEEKCSTPTAKLKQVADAMVVEMHAGLASEGGSKLKMLISYVDNLPTGDESGLYYA LDLGGTNFRVLRVHLGGRNGGLVSQEFAEVPIPPELMTGASDELFDYIAAELTKFVAEEGEEHELPPGRKRELGFTFSFPVNQTSIASGTLVRWTKGFSI DELVGQDVVTELTKAMKRQNLEMHVSALVNDTVGTLAGGRYTNKDVDAAVILGTGTNAAYVERAQAIPKWHGALPKSGEMVINMEWGNFKSSHLPITEYD NALDVESLNPGEQIFEKIISGMYLGEIVRRVLLKMAEEASFFGDTVPSKLKIPFVLRTPDMSAMHHDTSSDLKVVATKLKDILEIPSTSLKARKVIVEVC NIIATRGARLAAAGVVAILRKMGKDTVKEGGEVGKTVVAMDGGLYEHYNEYSKCLEITLPELLGEQVSKTVQIVHANDGSGIGAALLAASHSQYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10038287 [exp]	0	1
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10011326 [exp]	7.3	0.7379
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10013361 [exp]	8.4	0.8028
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	12.7	0.7632
AT4G16400			unknown protein		Lus10004418 [exp]	18.7	0.7967
AT1G22170			Phosphoglycerate mutase family...		Lus10020910 [exp]	33.2	0.7093
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10015004 [exp]	33.8	0.7886
AT3G51490		TMT3	tonoplast monosaccharide trans...		Lus10012709 [exp]	37.8	0.7766
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	41.6	0.7557
AT5G62930			SGNH hydrolase-type esterase s...		Lus10027675 [exp]	46.9	0.7136
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	51.4	0.7170

Compare expression of checked genes

Lus10038287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.