Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16270 362 / 2e-116 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025811 [exp] 523 / 2e-178 AT3G16270 698 / 0.0 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187000 [exp] 393 / 2e-128 AT3G16270 792 / 0.0 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10038289 pacid=23158288 polypeptide=Lus10038289 locus=Lus10038289.g ID=Lus10038289.BGIv1.0 annot-version=v1.0 ATGGATTCCAGCAGGAGAGCGGTTGAGTCGTACTGGAGATCCAGGATGATCGACGGGGCGACTTCTGACGAAGATAAGGTTGCTCCCGTCTACAAATTGG AAGAGATTTGTGATCTCTTGCGCTCTTCTCATGTTAGTATCGTCAAGGAGGTGTCCGATTTCATTTTGAAGAGGCTCGATCATAAGAGTCCCGTTGTTAA ACAGAAGGCTCTCAGATTAATAAAATATGCTGTGAGAAAGTCTGGAGCTGAGTTCAGGAGGGAAATGCAAAGACATTCTGTGGCTGTACGTCAGTTACTT CACTACAGAGGGCAGCCGGATCCTTTGAAGGGAGATGCCCTGAATAAGGCCGTGAGAGATACAGCTCAGGATGCTATTTCTGCAATTTTTTCCGAGAAGA ACAAGAAAAAAACACCAGCACAACTCACTAAGCGTATGGAAGGATTTGGAAACACGAATTTTGAAATGCGATCTGATGATAAGAAGTCCTTTGACTCCTT TCTTAGTGAAGTAGTTGACATAGGAAGTGCAACTATCAAGCAGGGACTTAGTAGCTTGACTCAAGGGAATCCGCAAAGAATGAATGATCCTGGGAACTAC AGAAGCCCAAATCTTCACCGGTCATTGACTAATGACCGTGATAGTTCAGATAGATATGAGCCAGTACAGTTGCGCAATGACAACCATGGAAATTTTGGGG GTTCAAGAGCTTCGACTGGAGGATCATGGGGCCAGGATTTAAGATCAGCAAATGTTACAGTAGAAAATGGGAACTCTAGTTCCAGCAATGCGGGGAGCAA GACTCGAGAGGAAAGGTTGCTAGAGACCATTGTGACGTCGGGTGGTGTCTTAAGCCTTTTGGATGGTGGAAAGGCAGGTGGCATTGCAAGTAACTCAGGG AAATCAGTGACTGCTGTTTCTCCCGTCCAGATTCCTGACTTAATAGACACAAGGGAGTCGGATGATTTCTTGAAAGCAGATGATCCTACTGAAATGTTAA ATGATCAAGTGATATCAAATGTTCCAGCAGCTTCTCCTTTCACTCACGATTTACTGGGAGAGAGTTTGGGTTCCAGTGGGAACTCTACAGAACAAAAAAA TGTGGATGACCCTTTTGCTGATGTCTCATTTCACTCGGGAGAGTCAAACGCACAAGCTGCTGATCTCTTTTCCGGAATGAACTTTGACGAAAACCAAAGT TCGGAAGAAAATCAAGTAGCTGCAAACGGACCTGAGCTATTTGATATATTTGGATCCGGTAGCACTCTGAAAAGCAGTCAAGAAAAACCAGCAGTTAATG ATTTACTTGCTGGTATGTCAATTAGTGAAGGTGTGAAGCAGCAAGTGAGCTCATCATCTATTAAATTTGAAGGTGCAAGCTCAGACCTCAGCCAAAATGT CTTGAACGATGGTTTGAAAAACATGGTAGGGGGATCCCAGTTGGGCATGATGAATGGAAGTAGTATGTATCCTTCTGCAATGCAGTATGGTATGCCTCCC GGCATGATGTTGAATCCTGCTTTGGCTGGTCAATCAATACCGCTAAATTACGGTGCTATGGGAGGGTTCCTTACTCAGCAGCAACTTCTTGCTGCAATGT CCAACTTCCAACAGTTGAGCAATTTGAATGCCCAGAATTATAGCCAGGGTAATGCTAGTCAAGCAAACGGGAGCAGTTCAGCACTTCCTGACATATTCCA TCCGAGCTTTCCTAATCAAAGTCCTACATCGACGATGAGCAGCTCAAAGAAAGAGGAGAGCAAAGCATTTGATTTCATCTCGGAGCATGTTGCAGCGGCG CGTGATCCAAGAAGAGTTTCGTAA
AA sequence Show only first row Show all	>Lus10038289 pacid=23158288 polypeptide=Lus10038289 locus=Lus10038289.g ID=Lus10038289.BGIv1.0 annot-version=v1.0 MDSSRRAVESYWRSRMIDGATSDEDKVAPVYKLEEICDLLRSSHVSIVKEVSDFILKRLDHKSPVVKQKALRLIKYAVRKSGAEFRREMQRHSVAVRQLL HYRGQPDPLKGDALNKAVRDTAQDAISAIFSEKNKKKTPAQLTKRMEGFGNTNFEMRSDDKKSFDSFLSEVVDIGSATIKQGLSSLTQGNPQRMNDPGNY RSPNLHRSLTNDRDSSDRYEPVQLRNDNHGNFGGSRASTGGSWGQDLRSANVTVENGNSSSSNAGSKTREERLLETIVTSGGVLSLLDGGKAGGIASNSG KSVTAVSPVQIPDLIDTRESDDFLKADDPTEMLNDQVISNVPAASPFTHDLLGESLGSSGNSTEQKNVDDPFADVSFHSGESNAQAADLFSGMNFDENQS SEENQVAANGPELFDIFGSGSTLKSSQEKPAVNDLLAGMSISEGVKQQVSSSSIKFEGASSDLSQNVLNDGLKNMVGGSQLGMMNGSSMYPSAMQYGMPP GMMLNPALAGQSIPLNYGAMGGFLTQQQLLAAMSNFQQLSNLNAQNYSQGNASQANGSSSALPDIFHPSFPNQSPTSTMSSSKKEESKAFDFISEHVAAA RDPRRVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16270			ENTH/VHS family protein (.1)		Lus10038289 [exp]	0	1
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	2.8	0.8158
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10012835 [exp]	4.0	0.8017
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	8.0	0.8118
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	9.5	0.7990
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	9.9	0.8103
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	10.7	0.7967
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	13.3	0.7924
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	14.5	0.7780
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037602 [exp]	19.3	0.7429
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	21.0	0.7616

Compare expression of checked genes

Lus10038289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.