Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16260 1063 / 0 TRZ4 tRNAse Z4 (.1) AT1G52160 985 / 0 TRZ3 tRNAse Z3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025810 [exp] 1622 / 0 AT3G16260 1076 / 0.0 tRNAse Z4 (.1) Lus10038291 [exp] 470 / 5e-160 AT3G16260 215 / 6e-64 tRNAse Z4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G186900 [exp] 1228 / 0 AT3G16260 1148 / 0.0 tRNAse Z4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10038290 pacid=23158350 polypeptide=Lus10038290 locus=Lus10038290.g ID=Lus10038290.BGIv1.0 annot-version=v1.0 ATGCGCCCATATATCTCCGGACTTCGTCTTCTCTTCTCCCCTCTAAACCCTTCTCCTCTCCTTCTCTCCAATTGCTCAACTATTTCTAGGTTCAGGCACC GCTCTTTCTTCCCCATCCTCTCTTCTTTTTATTCTTCTTCTTTTCAACCTCCTCATAGAAGGCAGCGATCTTCTTCTGTCCCCAACCGTCGCCGCCAGCA GCAGCCATTCAATTTAAGGGGCAGAGGGAACAGCACCTTAACTGATATAAAGAACACGGATACTAATCACAAGGAAGGAGCAGCTTCGATGGATCAGAAT CAAACTCTTCCTGGGTTTAATAAGAGAAGGGCCGAGGGTAGAGATAAAAGTGACAGACCTAAGAATCTTCAGTTGAAAGTTCGCAAATTGAATCCCACTA ACACCATCGCTTATGTCCAGATTCTTGGAACAGGAATGGACACTCAGGATACTTCACCTTCGGTTTTGCTTTTCTTTGACAAGCAAAGATTCATTTTCAA TGCTGGCGAGGGATTACAACGATTCTGTACAGAACATAAGATCAAGCTATCCAAGATTGATCATATATTTCTCTCTCGCGTCTGCTCCGAAACAGCTGGT GGACTTCCAGGACTGTTGTTGACTATGGCTGGCATCGGAGATCAGGGAATGTCGGTTAATTTGTGGGGTCCTTCAAATCTGAAGTACTTGGTTGATGCAA TGAAGTGTTTTATCCCACATGCTGCCATGGTGCACACAAGAAGTTTTGGTTGTGATGCGCCCTCACAATTGGATGCAAAGGTATCAATGGAGCCTATTGT GCTTGTTGATGATGAGGTGGTTAAAATATCAGCACTTCTACTTCGACCACAAGGCTCAGAAGTAGCTGAAGTCAAGCCAGGCGATATATCAGTGATATAC ATCTGTGAACTGCCTGAGATTATGGGAAAATTTGACCCTGGAAAGGCCAAAGCCCTTGGTTTGAGAGCCGGACCAAAATATGGTGAACTCCAAAAGGGGA AATCTGTGATGTCAGATCGTGACAATATCATGATCCACCCAAGTGATGTAATGGGTCCTCGTGTTCCTGGTCCTATTGTATTTCTTGTTGATTGTCCCAC TGAGGCTCATGTACAAGATCTATTGTCAACAGAATCTCTCGAAAGTTATTGTACAGGTAGCTCTGGTAATTTACCTGAAGGTGATAAGATTGTAAATTGT ATTGTTCATTTAAGTCCATCATCTGTGGTAAGCAGTCACAGTTATCAGAAATGGATGAGGAAATTCAGTTCAGCTCAGCAAATTATTGCCGGGCATCAAA CCCGAAATGTGGAAATCCCTATTCTTGAATCCAGCGCCAGGGTTGCAGCACGTCTAAATTACTTGTGTCCTCAGGTCTTTCCGGCTCCTGGATTCTGGTC GCTGCAAGACCTAAACAACAAAACAACAGAATCTAGCTTCTCCAGCGAGGAGCTTCCTTCGATAGCTAACAAAAGCATATCTGCTGAAAATCTCCTCAAG TTCACGCTGCGTCCTCATGCTCAACTAGGGTTGGACAAGGCAAATATTCCAAGTAATGGGACTTCATCAGAAGTCATAGACGCATTAATAACAGAGATCC CTGAGATAGTGGATGCTGCCAAACACGTTGGCCAGTTCTGGGATGAACCTGGAGGAAGGGGCTTGAACCTGTTGCAAGATGACAACACTATGACGGAAGA ACCTTGGTTGGAAGTAAAAAGAATACCTAGTTGCTTAGAAAATGTAAGGAGAGATGATCTAGAGATGGTCCTTCTGGGAACTGGTTCATCCCAGCCTTCA AAGTACCGTAATGTCACTTCCATCTACATTAATCTCTTTTCCAAAGGAAGTTTGTTGCTAGATTGCGGTGAAGGAACCCTGGCACAATTGAAAAGAAGGT ATGGTGTGGAAGGCGCTGATAATGCGGTAAGAAATCTAAGCTGTGTCTGGATTTCTCATATCCATGCTGATCATCATACAGGATTAGCAAGAATACTAGC TCTACGGCGACAACTCCTACAAGGCACAGTTCATGAACCATTACTTGTTGTGGGACCAGCAATGCTTAGGAGGTTTCTTATTGCTTATCAAAATCTTGAA GACCTGGATATGGAGTTCCTTGATTGCAGGAGCACAACAACAGCTACATGGGATGATTTTGAGCGCAACAGTGAATTGAAGGATCAGTCATCAACAGATA CTCAGTCGACACTCTTTGGTAACTCTAACCGGATGCAGAGTTACTGGAAAACGCCAGGGAGTCCAGTTGACAAGAATAGGTACTTCCCACTTCTAAAGAA GCTGCAGAAAGTTCTGAAAGAAGCAGGCTTGGAATCTTTGATTAGCTTCCCAGTCGTGCATTGCCCTCAGTCTTTTGGGGTGGCGCTGAAAGCTGCAGAA AGAGTGAACAATGTTAGGAAAATGATCCCGGGATGGACGATTGTGTACTCTGGTGACACTAGGCCATGCCCCGAACTGGAGGAAGCATCTCGTGAAGCGA CAGTTCTCATACACGAGGCAACCTTTGAAGATGGGTTAATGGAAGAAGCGGTAGCCAAAAACCACAGCACAACAAAGGAAGCCATCGAAGTTGGAGACAA AGCGGGAGTGTACCGCATAATCCTGACACACTTCAGCCAGAGATATCCAAAGATTCCACTGTTTGATGACGCCCATATGCATAAAACATGCATAGCATTC GATTTGATGAGTGTTAACTTGGCAGACCTGCCTGTCCTCCCGAGTGTTCTTCCTTTCCTTAAATTGCTCTTCAAAGATGATTTGGTTGTTGATGAACCAG ATGATGATGATGATGCTCTGGAACAAGCTGCTGTTGTTGTCTAA
AA sequence Show only first row Show all	>Lus10038290 pacid=23158350 polypeptide=Lus10038290 locus=Lus10038290.g ID=Lus10038290.BGIv1.0 annot-version=v1.0 MRPYISGLRLLFSPLNPSPLLLSNCSTISRFRHRSFFPILSSFYSSSFQPPHRRQRSSSVPNRRRQQQPFNLRGRGNSTLTDIKNTDTNHKEGAASMDQN QTLPGFNKRRAEGRDKSDRPKNLQLKVRKLNPTNTIAYVQILGTGMDTQDTSPSVLLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLSRVCSETAG GLPGLLLTMAGIGDQGMSVNLWGPSNLKYLVDAMKCFIPHAAMVHTRSFGCDAPSQLDAKVSMEPIVLVDDEVVKISALLLRPQGSEVAEVKPGDISVIY ICELPEIMGKFDPGKAKALGLRAGPKYGELQKGKSVMSDRDNIMIHPSDVMGPRVPGPIVFLVDCPTEAHVQDLLSTESLESYCTGSSGNLPEGDKIVNC IVHLSPSSVVSSHSYQKWMRKFSSAQQIIAGHQTRNVEIPILESSARVAARLNYLCPQVFPAPGFWSLQDLNNKTTESSFSSEELPSIANKSISAENLLK FTLRPHAQLGLDKANIPSNGTSSEVIDALITEIPEIVDAAKHVGQFWDEPGGRGLNLLQDDNTMTEEPWLEVKRIPSCLENVRRDDLEMVLLGTGSSQPS KYRNVTSIYINLFSKGSLLLDCGEGTLAQLKRRYGVEGADNAVRNLSCVWISHIHADHHTGLARILALRRQLLQGTVHEPLLVVGPAMLRRFLIAYQNLE DLDMEFLDCRSTTTATWDDFERNSELKDQSSTDTQSTLFGNSNRMQSYWKTPGSPVDKNRYFPLLKKLQKVLKEAGLESLISFPVVHCPQSFGVALKAAE RVNNVRKMIPGWTIVYSGDTRPCPELEEASREATVLIHEATFEDGLMEEAVAKNHSTTKEAIEVGDKAGVYRIILTHFSQRYPKIPLFDDAHMHKTCIAF DLMSVNLADLPVLPSVLPFLKLLFKDDLVVDEPDDDDDALEQAAVVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038290 [exp]	0	1
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	3.0	0.9066
AT5G57120			unknown protein		Lus10001434 [exp]	4.8	0.8319
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10022391 [exp]	5.5	0.8248
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025215 [exp]	6.8	0.8935
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10032484 [exp]	8.2	0.8845
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	12.8	0.8745
AT2G45280		ATRAD51C	RAS associated with diabetes p...		Lus10030284 [exp]	14.1	0.7809
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10001388 [exp]	14.5	0.8111
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038291 [exp]	16.6	0.8504
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	17.1	0.8856

Compare expression of checked genes

Lus10038290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.