Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16260 215 / 5e-64 TRZ4 tRNAse Z4 (.1) AT1G52160 198 / 5e-58 TRZ3 tRNAse Z3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038290 [exp] 467 / 2e-159 AT3G16260 1122 / 0.0 tRNAse Z4 (.1) Lus10025810 [exp] 464 / 1e-158 AT3G16260 1076 / 0.0 tRNAse Z4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G186900 [exp] 243 / 3e-74 AT3G16260 1148 / 0.0 tRNAse Z4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038291 pacid=23158437 polypeptide=Lus10038291 locus=Lus10038291.g ID=Lus10038291.BGIv1.0 annot-version=v1.0 ATGCGCCCATATATCTCCGGACTTCGTCTTCTCTTCTCCCCTCTAAACCCTTCTCCTCTCCTTCTCTCCAATTGCTCAACTATTTCTAGGTTCAGGCACC GCTCTTTCTTCCCCATCCTCTCTTCTTTTTATTCTTCTTCTTTTCAACCTCCTCATAGAAGGCAGCGATCTTCTTCTGTCCCCAACCGTCGCCGCCAGCA GCAGCCATTCAATTTAAGGGGCAGAGGGAACAGCACCTTAACTGATATAAAGAACACGGATACTAATCACAAGGAAGGAGCAGCTTCGATGGATCAGAAT CAAACTCTTCCTGGGTTTAATAAGAGAAGGGCCGAGGGTAGAGATAAAAGTGACAGACCTAAGAATCTTCAGTTGAAAGTTCGCAAATTGAATCCCACTA ACACCATCGCTTATGTCCAGATTCTTGGAACAGGAATGGACACTCAGGATACTTCACCTTCGGTTTTGCTTTTCTTTGACAAGCAAAGATTCATTTTCAA TGCTGGCGAGGGATTACAACGATTCTGTACAGAACATAAGATCAAGCTATCCAAGTTGCTTAGCATTTTCACTATCCCTCCAGGACTGTTGTTGACTATG GCTGGCATCGGAGATCAGGGAATGTCGGTTAATTTGTGGGGTCCTTCAAATCTGAAGTACTTGGTTGATGCAATGAAGTGTTTTATCCCACATGCTGCCA TGGTGCACACAAGAAGTTTTGGTTGTGATGCGCCCTCACAATTGGATGCAAAGGTATCAATGGTATCTGGTTTTCTGTTTACAAAATGA
AA sequence Show only first row Show all	>Lus10038291 pacid=23158437 polypeptide=Lus10038291 locus=Lus10038291.g ID=Lus10038291.BGIv1.0 annot-version=v1.0 MRPYISGLRLLFSPLNPSPLLLSNCSTISRFRHRSFFPILSSFYSSSFQPPHRRQRSSSVPNRRRQQQPFNLRGRGNSTLTDIKNTDTNHKEGAASMDQN QTLPGFNKRRAEGRDKSDRPKNLQLKVRKLNPTNTIAYVQILGTGMDTQDTSPSVLLFFDKQRFIFNAGEGLQRFCTEHKIKLSKLLSIFTIPPGLLLTM AGIGDQGMSVNLWGPSNLKYLVDAMKCFIPHAAMVHTRSFGCDAPSQLDAKVSMVSGFLFTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038291 [exp]	0	1
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10034355 [exp]	1.4	0.9063
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	4.0	0.9042
AT5G06400			Pentatricopeptide repeat (PPR)...		Lus10021250 [exp]	6.0	0.8913
AT4G15790			unknown protein		Lus10004794 [exp]	6.9	0.8660
AT3G10310			P-loop nucleoside triphosphate...		Lus10031058 [exp]	15.0	0.8678
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	16.0	0.8922
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10038290 [exp]	16.6	0.8504
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10011019 [exp]	19.7	0.8788
AT5G52820			WD-40 repeat family protein / ...		Lus10029493 [exp]	21.9	0.8507
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	23.7	0.8801

Compare expression of checked genes

Lus10038291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.