Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16240 299 / 6e-103 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1) AT4G17340 273 / 6e-93 TIP2;2, DELTA-TIP2 tonoplast intrinsic protein 2;2 (.1) AT5G47450 271 / 7e-92 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) AT2G36830 232 / 1e-76 TIP1;1, GAMMA-TIP1, GAMMA-TIP TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) AT3G26520 228 / 7e-75 TIP1;2, SITIP, GAMMA-TIP2, TIP2 SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, tonoplast intrinsic protein 2 (.1) AT4G01470 216 / 3e-70 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1) AT2G25810 198 / 2e-63 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT1G17810 194 / 1e-61 BETA-TIP beta-tonoplast intrinsic protein (.1) AT1G73190 191 / 4e-60 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT3G47440 167 / 6e-51 TIP5;1 tonoplast intrinsic protein 5;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025808 [exp] 344 / 1e-120 AT3G16240 389 / 2e-138 delta tonoplast integral protein (.1) Lus10004733 [exp] 281 / 8e-96 AT5G47450 393 / 4e-140 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) Lus10007796 [exp] 278 / 1e-94 AT5G47450 389 / 1e-138 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) Lus10022611 [exp] 223 / 6e-73 AT2G36830 403 / 5e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10021510 [exp] 221 / 2e-72 AT2G36830 402 / 9e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10014411 [exp] 220 / 8e-72 AT2G36830 390 / 4e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10005885 [exp] 220 / 1e-71 AT4G01470 395 / 1e-140 tonoplast intrinsic protein 1;3 (.1) Lus10023913 [exp] 219 / 2e-71 AT2G36830 391 / 3e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10040863 [exp] 215 / 1e-69 AT4G01470 394 / 2e-140 tonoplast intrinsic protein 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G186700 [exp] 308 / 8e-107 AT3G16240 372 / 8e-132 delta tonoplast integral protein (.1) Potri.003G050900 [exp] 306 / 4e-106 AT3G16240 311 / 5e-108 delta tonoplast integral protein (.1) Potri.003G077800 [exp] 283 / 1e-96 AT4G17340 351 / 2e-123 tonoplast intrinsic protein 2;2 (.1) Potri.001G157000 [exp] 259 / 3e-87 AT4G17340 333 / 3e-116 tonoplast intrinsic protein 2;2 (.1) Potri.010G209900 [exp] 234 / 2e-77 AT4G01470 389 / 2e-138 tonoplast intrinsic protein 1;3 (.1) Potri.008G050700 [exp] 234 / 2e-77 AT4G01470 387 / 2e-137 tonoplast intrinsic protein 1;3 (.1) Potri.006G121700 [exp] 220 / 5e-72 AT2G36830 345 / 6e-121 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.016G098200 [exp] 219 / 1e-71 AT2G36830 354 / 1e-124 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.006G239700 [exp] 213 / 6e-69 AT2G25810 355 / 5e-125 tonoplast intrinsic protein 4;1 (.1) Potri.004G216500 [exp] 206 / 3e-66 AT4G01470 331 / 2e-115 tonoplast intrinsic protein 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10038293 pacid=23158177 polypeptide=Lus10038293 locus=Lus10038293.g ID=Lus10038293.BGIv1.0 annot-version=v1.0 ATGGCGAAAATAGCATTCGGTAGATTTGATGACTCCTTCAGCTTCGGCTCAATCAAGGCCTACATTGCCGAGTTCATCTCTACCCTCCTCTTCGTTTTCG CTGGGGTTGGGTCCGCCATCGCTTTCAATAAGCTGACAGCAGATGCAGCACTCGACCCAGCTGGACTGGTTGCAGTTGCTGTCGGACACGCACTAGCCCT CTTCGTCGCAGTCTCAGTTGGCGCCAACATCTCAGGTGGACATGTCAACCCAGCTGTCACCTTCGGATTGGCCGTCGGAGGCCAAATCACCATCCTCACT GGCATCTTCTACTGGATTGCCCAGCTCGTCGGCTCCATCGTCGCTTGCTACCTCCTCAAAGTTGTCACCGGCGGCTTGGCTATTCCGACGCACGGCGTGG CGGCGGGAGTGGGAGCAGCGCAGGGAGTGGTGATGGAGATAATAATCACGTTCGGATTGGTATACACGGTGTACGCGACCGCAGCTGATCCCAAGAAAGG TTCGTTGGGAACCATTGCTCCGATTGCAATCGGGTTCGTGGTGGGTGCAAACATATTGGCAGCCGGCCCATTCTCAGGTGGATCAATGAACCCAGCAAGG TCTTTCGGGCCGGCTGTGGCCAGTGGGGATTTCTCCGGAAACTGGATCTACTGGGTCGGACCTCTCATCGGAGGTGGCCTTGCTGGCCTTATCTACCCCA ACGTCTACATGTCCTCCGGCCATGCTCCTCTGGCCAGTGACTACTGA
AA sequence Show only first row Show all	>Lus10038293 pacid=23158177 polypeptide=Lus10038293 locus=Lus10038293.g ID=Lus10038293.BGIv1.0 annot-version=v1.0 MAKIAFGRFDDSFSFGSIKAYIAEFISTLLFVFAGVGSAIAFNKLTADAALDPAGLVAVAVGHALALFVAVSVGANISGGHVNPAVTFGLAVGGQITILT GIFYWIAQLVGSIVACYLLKVVTGGLAIPTHGVAAGVGAAQGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFVVGANILAAGPFSGGSMNPAR SFGPAVASGDFSGNWIYWVGPLIGGGLAGLIYPNVYMSSGHAPLASDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10038293 [exp]	0	1
AT5G17190			unknown protein		Lus10034347 [exp]	4.6	0.7817
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10015922 [exp]	8.5	0.7506
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	8.7	0.8163
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Lus10023609 [exp]	8.9	0.6949
AT2G38610			RNA-binding KH domain-containi...		Lus10021676 [exp]	9.0	0.7805
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10029102 [exp]	9.7	0.7567
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10035483 [exp]	10.7	0.7859
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10026001 [exp]	13.3	0.6892
AT4G34215			Domain of unknown function (DU...		Lus10014097 [exp]	14.7	0.7806
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	15.2	0.8010

Compare expression of checked genes

Lus10038293 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.