Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025807 [exp] 398 / 3e-138 ND 39 / 0.002 Lus10038295 [exp] 206 / 2e-64 ND 37 / 0.005 Lus10025806 [exp] 209 / 1e-63 ND 40 / 0.002 Lus10037541 [exp] 98 / 1e-23 AT3G14300 41 / 4e-04 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10025781 [exp] 87 / 6e-20 ND / Lus10025782 [exp] 77 / 2e-15 ND / Lus10037542 [exp] 74 / 3e-15 ND / Lus10011452 [exp] 74 / 2e-14 ND / Lus10037540 [exp] 58 / 2e-09 ND 40 / 7e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119200 [exp] 57 / 3e-09 AT1G02550 97 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G195000 [exp] 50 / 5e-07 AT1G02550 76 / 3e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194900 [exp] 45 / 2e-05 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194800 [exp] 43 / 0.0001 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G209800 [exp] 41 / 0.0005 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.014G119400 [exp] 42 / 0.0007 AT1G02550 78 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10038294 pacid=23158162 polypeptide=Lus10038294 locus=Lus10038294.g ID=Lus10038294.BGIv1.0 annot-version=v1.0 ATGGATATCTCAAGGAACTCAACGATATTCCTCATTTTCACCCTCACCATCACTCTTTCATCTCTTCTCCCCATCTCCATCTCACATGAATCCCCATCTC CGTCCCCTTCTGCCAATGACGTGTCATCATCATCCTCACCATCCATCTCCCCCTCATCATCGGATGCAGCCTCCCCTTCTGCTTCACCTTCCGGCGATGA CGTGTCATCATCCTCACCATCCACCTCCCCATCATCATCATCGTCAGATGCATCGTCTACATTAACCACGTCCCCATCATCGTCCCCTTCCTCCGGCGAT GACGTGTCATCATCGTCCCCCTCCTCCGGCGATGCCGTGTCCCCCTCTTCCGGTGATGACGTGTCATCATCGTCACCCTCTGGCGAAACGGAATCCTCCT CCACAACAAGTACTACTACTACTACTAGTAGTTCTAGTAGTGATTCATCATCCTCCTCCTCTGATGAGTCCTCTGCACCGGCACCTTCACCGGACTCATC GTACCCATCATTCCCAACGATGTTCTCAACAAAATTCGAGAGGAGGATGGAAGAAGTAGAGAGCGGGTCGTCGATGAGAACCAACCCGACCAACTTGGTG AAAGAGCTGTGCTCAGGAGTAGAGAACCCAGGGAAGTGCATGGAGTTCTTCCGTGACTCGCGCTCCGAAGACCCAGCGGAGATCATCGCCACCGAGATCG GGACGCTGAAGACGCTGGTCAAGGAAGGAATCTCCGCCGCCACCAAGGTCAGGAGCAGGCAGGACGGCAGCGAGGCAGTCACCCATTGCTTGGACGTGTG TCTCGAGAATTACGACAAGGCGATGTCCAACCTGGACAAAGCGACCGCCACGTGTTCGAGATGCATTCGTGCCAACCCCAAGTGCACACCTAAGGAGACC GGCGAGGTGAAGACAATGCTTAGCGCTGCCATCTCTAACGTTGGGTTCTGCGACGAGTCATTTAACGCACAGGGGCTTCCTGACCCGCCCATGAAGGCTA CCAACGATGCTGTTGTCGAGTTGACCGATTGGCTTTTGGAGTTCTGTAAGAAGTTGGACCAGAAGTACTAA
AA sequence Show only first row Show all	>Lus10038294 pacid=23158162 polypeptide=Lus10038294 locus=Lus10038294.g ID=Lus10038294.BGIv1.0 annot-version=v1.0 MDISRNSTIFLIFTLTITLSSLLPISISHESPSPSPSANDVSSSSSPSISPSSSDAASPSASPSGDDVSSSSPSTSPSSSSSDASSTLTTSPSSSPSSGD DVSSSSPSSGDAVSPSSGDDVSSSSPSGETESSSTTSTTTTTSSSSSDSSSSSSDESSAPAPSPDSSYPSFPTMFSTKFERRMEEVESGSSMRTNPTNLV KELCSGVENPGKCMEFFRDSRSEDPAEIIATEIGTLKTLVKEGISAATKVRSRQDGSEAVTHCLDVCLENYDKAMSNLDKATATCSRCIRANPKCTPKET GEVKTMLSAAISNVGFCDESFNAQGLPDPPMKATNDAVVELTDWLLEFCKKLDQKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038294 [exp]	0	1
AT5G18020			SAUR-like auxin-responsive pro...		Lus10039020 [exp]	1.7	0.9169
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	2.8	0.8732
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	4.2	0.8813
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	5.7	0.8945
					Lus10019921 [exp]	7.0	0.8634
AT1G04240	AUX_IAA	IAA3, SHY2	SHORT HYPOCOTYL 2, indole-3-ac...		Lus10024853 [exp]	8.5	0.8641
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	9.9	0.8527
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	10.4	0.8407
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10021356 [exp]	10.8	0.7670
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039487 [exp]	13.6	0.8629

Compare expression of checked genes

Lus10038294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.