Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025806 [exp] 411 / 2e-143 ND 40 / 0.002 Lus10038294 [exp] 204 / 1e-63 ND 42 / 4e-04 Lus10025807 [exp] 202 / 8e-63 ND 39 / 0.002 Lus10037541 [exp] 92 / 5e-22 AT3G14300 41 / 4e-04 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10025781 [exp] 73 / 3e-15 ND / Lus10025782 [exp] 69 / 5e-13 ND / Lus10011452 [exp] 54 / 3e-08 ND / Lus10018615 [exp] 49 / 4e-07 AT1G02550 49 / 3e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10037542 [exp] 49 / 1e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119200 [exp] 63 / 2e-11 AT1G02550 97 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194900 [exp] 48 / 2e-06 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194800 [exp] 46 / 1e-05 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10038295 pacid=23158294 polypeptide=Lus10038295 locus=Lus10038295.g ID=Lus10038295.BGIv1.0 annot-version=v1.0 ATGGAAATCTCAAACAAACCATTATCGTCATTCTTGTTCATTGTCATCGCTGTATCTTCTCTCCTCACAACTTCCACCTCTCGAACGACTCCACTATCTC ACGCCGTAGAATCCCCCGCTACTTCTCCGACACCCTTCAAATACACCGACCAGGATGCATCCTCCCCATCTCCATCTCCCTTCGACGATGGAGATGTAGA TGTAACTTCTCCGTCTCCATCTCCGTTGGATGGGTATGAAGACCAATCACCTTCCCCGCCTCCTTCACTAAAAACATCCACCAAACTCGAACGCATGATG CAAGAAAGCATGGTGGAGGGATCTTCCTCTACCGCCGCGAACGACCCCACTGCGCTCGTAAAGGACCTTTGCTCCGGAGCAGAGGACCCTGAAAAGTGCA GGCAGTACTTCCAATACTCCAAGTCCAACGATGCTGCCCAAATTGTGCACTCGGAGATCAACACGCTGAAGACATTAATCGAGGAAGGGAAGTCGACAGC TACTAAGGTGAAGCAACAACAACATGAGTCGGCAGAAGTCACCCACAGCCTTGATGTTTGTGTGGAAAGCTACGACAAGGCAAACAAGAACCTCGAGAAG GCTTCCATGACGAGCACGAAATGTGTAGGGGCGGCGAAGAAGGAAGAGTGCTCTGCGGTGGAGGTAGGAGAGGTGAAGGCTATGCTAAGTGCTACGATTG CAAACATTGGGGAGTGTGAAGAAGCGTTTGAAGGAAAAGGACTTCTCAGGCCTCCGATGAAAGCCACTAATGAGGCGGTGGTGGAGTTGTCCGATTGGTT GTTGGAGTTCTCCAGAAAACTGGAAGAATGA
AA sequence Show only first row Show all	>Lus10038295 pacid=23158294 polypeptide=Lus10038295 locus=Lus10038295.g ID=Lus10038295.BGIv1.0 annot-version=v1.0 MEISNKPLSSFLFIVIAVSSLLTTSTSRTTPLSHAVESPATSPTPFKYTDQDASSPSPSPFDDGDVDVTSPSPSPLDGYEDQSPSPPPSLKTSTKLERMM QESMVEGSSSTAANDPTALVKDLCSGAEDPEKCRQYFQYSKSNDAAQIVHSEINTLKTLIEEGKSTATKVKQQQHESAEVTHSLDVCVESYDKANKNLEK ASMTSTKCVGAAKKEECSAVEVGEVKAMLSATIANIGECEEAFEGKGLLRPPMKATNEAVVELSDWLLEFSRKLEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038295 [exp]	0	1
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	1.4	0.9988
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	2.0	0.9969
					Lus10002317 [exp]	3.2	0.9867
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	3.5	0.9900
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10004165 [exp]	3.7	0.9587
					Lus10003755 [exp]	5.3	0.9884
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10002496 [exp]	6.3	0.9363
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	6.7	0.9778
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036819 [exp]	7.0	0.9785
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10036832 [exp]	7.3	0.9804

Compare expression of checked genes

Lus10038295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.