Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34380 204 / 7e-60 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 200 / 1e-58 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 195 / 7e-57 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 194 / 1e-56 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 182 / 7e-52 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 178 / 9e-52 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 152 / 3e-41 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 146 / 2e-39 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 145 / 1e-38 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 118 / 5e-29 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025806 [exp] 264 / 5e-83 ND 40 / 0.002 Lus10011699 [exp] 196 / 7e-57 AT3G50390 256 / 5e-80 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 193 / 2e-56 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 189 / 9e-55 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10009510 [exp] 190 / 1e-54 AT3G50390 245 / 1e-75 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 182 / 2e-52 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 182 / 3e-52 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 177 / 3e-50 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 170 / 1e-47 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051100 [exp] 460 / 1e-159 AT2G26490 223 / 2e-67 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 214 / 6e-64 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 205 / 9e-61 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 201 / 4e-59 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 196 / 4e-57 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 194 / 3e-56 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 187 / 5e-54 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 179 / 2e-50 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 168 / 2e-47 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 157 / 3e-43 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10038296 pacid=23158327 polypeptide=Lus10038296 locus=Lus10038296.g ID=Lus10038296.BGIv1.0 annot-version=v1.0 ATGGCTTCAATATTGGATTCCCAAAACTCACCTCAAAACCCATCGTTCGCAATAAGAGAAACAACTCACCCGGCATCATTCCTAAGAAGCCTATCCTCCA AAGATCAACTTACTAATCAACATGATGATTACTTCCTCCCCTCACCACCTCGCCGTAGCTCTCAACTCGAAACCCACTACTCTAATCCCCTTGCCGCCTT CCTCTCCCCATCTCCTCAACCCTCCATCGGCCGCGGCCTCTTCCAAACCACGTACAGATGCGTCTCGTCGGCGATGCTCAAGGACGGCCAGATACTAGCC ATTGCAGCCACAAATGAGCTCATCTACACAGGATCCGAAACCAACGTGATACGCGTGTGGAAGCTTCCGGATTTATCCGAGTGTGGACATCTTAAGACGA GGGCCAGTAGTAGTAGTAGTAGTAGAGTGGTGGGCATACAAGTAGGACACGATAAGGTGTACGGTGCTTATGGGGATGGCAAGATACGAGTGTGGCAAAG AATCGTCGTCGTCGGTGGGCTTAAGCATGTCCGTATTGGTACCATTCCGGCCACTGGTGGCTATGTCCGGAGCTACATTTCTTCCGCCGGAAAGGATAAG ATGGCGGGCAAGCATATGGGCCCCATCACCTCACTAGCAATCAACATGTCGGACGACACCCTCTACTCGGCTTCCCTAGACAAAACTGTCAAAGTTTGGA GACTTGGCGACCTCAAATGTATCGAGACCATCCAGGCCCATTCTTCCCCTATCAACTCTCTTCTCATCTCCGACTCCTCCAATGCTCTCCTCTACACTGC TTCCGACGACACCACAATTCGAGTATGGCGCCGCAACTTTTGTAGTTCCGGGACCCGCCCACACACCCTCGTCGTTACCTTGTCAGCCAAGCAATCCCCA GTCAAAGCCCTTGCGTTGACATTCAACAGGTCCACCCTCTACGGAGGGTGTTCGGACGGTTACATACACTTCTGGCTAACAGGATGGCTCTGTGGCCAAT TGCAGTACGGTGGCGCACTGCAGGGCCACACTCATTCAGTCATGACGCTGGCATGCAGCGGGAAGCGCTACATGGTTAGCGGGTCAGCGGATCGAACTTG CAGGGTGTGGGGGAGAGAAGTAGACGGTAGAGGTCGACGCCACGTATGTTTGGTTGTTCTCGTCGGTCATCAAGGACCCATAAGGAGCCTTGTGGTGTTG CCTATGTGCTTGAACTTGATGATGAAGTCGCATAGTAGGTTTGATAATTATGGTGGTGGTGAACGTCAAGTGATTAGTGAAGGTGATGATGAATATGATG GTTTCATCGTTTGTAGTGGGAGCCTTGATGGAGTGCTGAAATTGTGGCGGGTCACTCAGGATGCCAGTGGCGGGAAGGCGATGGGCGCCGATGTGATGTG GGATAAGTAG
AA sequence Show only first row Show all	>Lus10038296 pacid=23158327 polypeptide=Lus10038296 locus=Lus10038296.g ID=Lus10038296.BGIv1.0 annot-version=v1.0 MASILDSQNSPQNPSFAIRETTHPASFLRSLSSKDQLTNQHDDYFLPSPPRRSSQLETHYSNPLAAFLSPSPQPSIGRGLFQTTYRCVSSAMLKDGQILA IAATNELIYTGSETNVIRVWKLPDLSECGHLKTRASSSSSSRVVGIQVGHDKVYGAYGDGKIRVWQRIVVVGGLKHVRIGTIPATGGYVRSYISSAGKDK MAGKHMGPITSLAINMSDDTLYSASLDKTVKVWRLGDLKCIETIQAHSSPINSLLISDSSNALLYTASDDTTIRVWRRNFCSSGTRPHTLVVTLSAKQSP VKALALTFNRSTLYGGCSDGYIHFWLTGWLCGQLQYGGALQGHTHSVMTLACSGKRYMVSGSADRTCRVWGREVDGRGRRHVCLVVLVGHQGPIRSLVVL PMCLNLMMKSHSRFDNYGGGERQVISEGDDEYDGFIVCSGSLDGVLKLWRVTQDASGGKAMGADVMWDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	0	1
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	2.4	0.9519
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	2.8	0.9488
					Lus10042300 [exp]	3.5	0.9303
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10014938 [exp]	3.5	0.9450
AT1G14430			glyoxal oxidase-related protei...		Lus10013274 [exp]	4.0	0.9435
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	4.2	0.9168
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	5.5	0.9412
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	5.9	0.9180
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	8.8	0.9065
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10022277 [exp]	9.2	0.9049

Compare expression of checked genes

Lus10038296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.