Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27750 176 / 3e-55 EMB3123 EMBRYO DEFECTIVE 3123, unknown protein AT5G09320 76 / 1e-15 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1) AT1G62350 44 / 2e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025805 [exp] 458 / 3e-166 AT3G27750 184 / 2e-58 EMBRYO DEFECTIVE 3123, unknown protein Lus10040756 [exp] 49 / 6e-07 AT3G46870 349 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036049 [exp] 47 / 5e-06 AT1G62350 316 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000892 [exp] 46 / 7e-06 AT1G62350 318 / 3e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G051400 [exp] 230 / 3e-76 AT3G27750 171 / 2e-53 EMBRYO DEFECTIVE 3123, unknown protein Potri.009G169600 [exp] 82 / 2e-18 AT5G09320 219 / 8e-67 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.007G134300 [exp] 49 / 9e-07 AT5G09320 114 / 1e-28 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.001G275000 [exp] 44 / 3e-05 AT1G62350 274 / 7e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038297 pacid=23158192 polypeptide=Lus10038297 locus=Lus10038297.g ID=Lus10038297.BGIv1.0 annot-version=v1.0 ATGGCGGCGTCTTCATCATCTCTTCGATCAATCTTCACTAATCTTCCTCTCTTCTCCATCAAACCCTGCCCCAAAACCCGAAAACCTTCCGCCACTTTCA CTCCCGTACGATGCGGCCCGCGCTCCAATCGCGGTCCTCTCATGAAAGGCCGAATCCTAAGCACAGAAGCAATCCACGCCATCCAGTCCCTGAAGCGCGC ATACCGCACCTCCAAACAACCCAACATCCCCAACCTCACGCGCCTCCTGAAGCCCGACCTAGTCTCCGTCCTCCGCGAGCTCCTCCGACAAGACCTCTGC CACATCGCTCTCAGCGTCTTCTCCATCTTGCGCTCAGAGTTCCCAGACCAGAAGGCTGACTTGAATCTCTACGGCGACGCCATCTTCGCGCTGCTAAAAA ACGGAATGATTGACGAGATCGAAAGCCTGGTCGCAGAGCTGGAGGCGGCGGCGGAGGAAGGTAAGGTCGAGTGGGAGCGCGATACCGGGACTGTGAGAGT TGTGAAAGGAGTGGTGGAAGCAGGGAGGAAAGAATCGACGGTCCGGATGGTGAAGATGCTGAGGAGGAGTGGGTGTGGGGACACGTGGTCGGCGGATGAA TATGCGGTTAATTATTTGAGTAAAGGGCTGAGGAACGTAGGGGAAGATGAATTAGCTGCAGAGATAGAGGTGGAATTTTTGAGGGTTTGCCAAACTGGTA ATGTTGTGAAGTTAGCCTTTTAA
AA sequence Show only first row Show all	>Lus10038297 pacid=23158192 polypeptide=Lus10038297 locus=Lus10038297.g ID=Lus10038297.BGIv1.0 annot-version=v1.0 MAASSSSLRSIFTNLPLFSIKPCPKTRKPSATFTPVRCGPRSNRGPLMKGRILSTEAIHAIQSLKRAYRTSKQPNIPNLTRLLKPDLVSVLRELLRQDLC HIALSVFSILRSEFPDQKADLNLYGDAIFALLKNGMIDEIESLVAELEAAAEEGKVEWERDTGTVRVVKGVVEAGRKESTVRMVKMLRRSGCGDTWSADE YAVNYLSKGLRNVGEDELAAEIEVEFLRVCQTGNVVKLAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10038297 [exp]	0	1
AT1G19740			ATP-dependent protease La (LON...		Lus10006131 [exp]	5.4	0.9154
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Lus10010555 [exp]	5.5	0.8845
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	5.8	0.8983
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	8.8	0.8977
AT4G29400			Protein of unknown function (D...		Lus10032701 [exp]	9.2	0.8722
AT2G22360			DNAJ heat shock family protein...		Lus10023148 [exp]	9.5	0.8549
AT5G44000			Glutathione S-transferase fami...		Lus10027233 [exp]	9.8	0.8645
AT2G37920		EMB1513	embryo defective 1513, copper ...		Lus10002043 [exp]	11.0	0.8815
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	11.0	0.8849
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10035530 [exp]	13.4	0.8800

Compare expression of checked genes

Lus10038297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.