Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42510 105 / 9e-29 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 103 / 5e-28 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G65870 98 / 8e-26 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 98 / 8e-26 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 86 / 3e-21 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21110 84 / 1e-20 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT3G58090 86 / 3e-20 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G38700 76 / 2e-17 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 75 / 4e-17 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G49040 74 / 1e-16 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025804 [exp] 327 / 6e-116 AT1G22900 116 / 7e-33 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10021083 [exp] 102 / 3e-27 AT1G22900 150 / 5e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10016231 [exp] 100 / 2e-26 AT1G65870 149 / 8e-46 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10021084 [exp] 99 / 5e-26 AT5G42500 164 / 2e-51 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029312 [exp] 89 / 1e-22 AT3G13660 135 / 1e-41 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10029306 [exp] 88 / 6e-22 AT1G65870 208 / 5e-69 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10018340 [exp] 87 / 1e-21 AT1G58170 129 / 3e-38 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10026176 [exp] 84 / 2e-20 AT1G58170 207 / 1e-68 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10042488 [exp] 82 / 2e-19 AT1G58170 202 / 1e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G061400 [exp] 96 / 7e-25 AT2G21110 223 / 7e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.009G131000 [exp] 94 / 2e-24 AT2G21100 236 / 4e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216400 [exp] 89 / 2e-22 AT1G58170 225 / 1e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216300 [exp] 86 / 4e-21 AT1G55210 221 / 5e-74 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2) Potri.016G060700 [exp] 85 / 7e-21 AT1G65870 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G009100 [exp] 84 / 2e-20 AT1G58170 238 / 1e-80 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.016G061000 [exp] 84 / 3e-20 AT1G58170 214 / 2e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.006G195300 [exp] 81 / 3e-19 AT5G49040 202 / 2e-66 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.009G130900 [exp] 80 / 5e-19 AT2G21110 185 / 5e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G216200 [exp] 80 / 6e-19 AT1G55210 239 / 2e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1), Disease resistance-responsive (dirigent-like protein) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10038298 pacid=23158281 polypeptide=Lus10038298 locus=Lus10038298.g ID=Lus10038298.BGIv1.0 annot-version=v1.0 ATGGCTTCCAATCTCTTCCTCTCCATCCTGACGCTATCCGTTCTTTACATCGCCTACACTATCCCAAGACACGACCATCACCAACCAAAGTCAACCAACC TTGTCGTCTACGTCCACGACAAGTTCACCGGTGCCGACGCAACTGCAGTGACGGTCGCCGGGAAGCAGGATGAGCCCACATCAGCCTTCAATATCCTGCG GTTCGGGTCCGTGGCCGTAGTGGACGATCCAGTCACGGATGGCCCCACAAAGGAGTCGAATGAAATCGGCAGGGCCCAGGGAGCATACATAAATTCGCAG ATGGACGGGAAGGGGCTGTATTTGGTATTCTCCATCATTTTCACCGGCGGGGAATATAAAGGGAGCACGGTGGAGATGCAAGGGTCGGATATTTTCTCGA TGAAAGAGAGGGAGTTTGGGGTGGTTTCGGGTACGGGTTATTTCAGATTTGTGAAAGGGTATGGGATCATGGAGACGGCGTTCATGGATGTTGCTAATCT TAGCGCCATTATTAAGCTTAATGTCACTGTTAAACATTACTAA
AA sequence Show only first row Show all	>Lus10038298 pacid=23158281 polypeptide=Lus10038298 locus=Lus10038298.g ID=Lus10038298.BGIv1.0 annot-version=v1.0 MASNLFLSILTLSVLYIAYTIPRHDHHQPKSTNLVVYVHDKFTGADATAVTVAGKQDEPTSAFNILRFGSVAVVDDPVTDGPTKESNEIGRAQGAYINSQ MDGKGLYLVFSIIFTGGEYKGSTVEMQGSDIFSMKEREFGVVSGTGYFRFVKGYGIMETAFMDVANLSAIIKLNVTVKHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42510			Disease resistance-responsive ...		Lus10038298 [exp]	0	1
AT4G31130			Protein of unknown function (D...		Lus10030037 [exp]	5.3	0.8203
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10042104 [exp]	7.1	0.8702
AT3G23360			Protein phosphatase 2C family ...		Lus10021171 [exp]	10.8	0.8379
AT1G67110		CYP735A2	"cytochrome P450, family 735, ...		Lus10006246 [exp]	12.0	0.8407
					Lus10034710 [exp]	12.9	0.8426
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10006245 [exp]	27.5	0.8110
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10022675 [exp]	28.1	0.8174
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10008930 [exp]	42.3	0.8094
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	46.0	0.8103
AT5G61310			Cytochrome c oxidase subunit V...		Lus10010008 [exp]	59.9	0.7947

Compare expression of checked genes

Lus10038298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.