Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65030 410 / 3e-144 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 44 / 0.0002 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT2G32950 43 / 0.0002 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 43 / 0.0003 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G80710 41 / 0.0008 DRS1 DROUGHT SENSITIVE 1 (.1) AT5G43920 41 / 0.001 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025803 [exp] 562 / 0 AT1G65030 447 / 1e-158 Transducin/WD40 repeat-like superfamily protein (.1) Lus10001046 [exp] 51 / 6e-07 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001411 [exp] 50 / 2e-06 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10040449 [exp] 48 / 7e-06 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10023563 [exp] 47 / 2e-05 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10001951 [exp] 44 / 0.0001 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10001924 [exp] 43 / 0.0003 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10030869 [exp] 42 / 0.0004 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 42 / 0.0005 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G107400 [exp] 447 / 6e-159 AT1G65030 441 / 3e-156 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 44 / 0.0002 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G049500 [exp] 43 / 0.0002 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.012G060800 [exp] 43 / 0.0004 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.010G064600 [exp] 42 / 0.0007 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 41 / 0.001 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10038299 pacid=23158394 polypeptide=Lus10038299 locus=Lus10038299.g ID=Lus10038299.BGIv1.0 annot-version=v1.0 ATGAGTCTAATAGCAGGTTCCTATGACAGGTTCATATGGGGGTTCAAACTCAAGCCCGTAGCAGACCAGCAATCCATCTTATCCCTAGTTCCCCTCTTTT CCTACCCTTCCCACTTATCTCCCATCCTCACCGTCGCCGCCTCCGGTCCGATCGCCGCCTCCGGATCCTCCGACGACACGATCCACCTCTACGACCTCCC TTCCGCCTCCTCTCTAGGATCCCTCCAGCAACACTCGGCTTCCGTAACTTCCCTCTCCTTCTTCACCCCTCCTTCCCTCTCCTTCCCCCGTAACCTAATA TCCGCCGACTCCGAAGGCTACGTTTGTATCTTCGATGCCGCCCCGTTCGTCCACCTGAAGACCGTGCGGGCCCACAAGAAGCAAGTCAACGACTTGGCTG TTCATCCCACTGGGAAATTGGCGCTTTCCGTTGGGAGGGACGATTGCTTGGCGATGTTGAATTTGGTGAGGGGTAGGAGGAGTTTCTATTGTACGCTTGG GAAAGAAGCTAGTCTGGTGAGGTATGATTGGACCGGTGACAAGTTTTTCATGGCCACAGAGGATAAAGTTGGGATTCATGAAGCTGAAGATGCCAAGCTA GTGGCTGAGCTTCAGTGCCCTAAAAGGGTTCTGTGTGCTGCCCCTGGAGAGAATGGGCTTCTATTCACTGGCGGTGAAGACCGGAATATCACCGCATGGG ACTGCAACAGCGGGAAGGTTGCCTACTCCATTGAAGGTGCTCATGAGTCTCGTGTGAAAGGTATTGTAGTGCTAACTAGGAACGATAGGGGTGTTGATGA CCCCTATTTGTTAGCATCAGCTGCTTCAGATGGGGTGATACGGGTATGGGATGTCCGTACCTCCACAAAGGAAAAGGCAAGTCCGTTAGCTGAGGCTAAG ACAAATGCGAGGCTGACCTGTCTTGCTGGATCATCTATCAAATCTTTCAAACGAGCACAAACAGCAGACGAGTGTCCTAGTTGA
AA sequence Show only first row Show all	>Lus10038299 pacid=23158394 polypeptide=Lus10038299 locus=Lus10038299.g ID=Lus10038299.BGIv1.0 annot-version=v1.0 MSLIAGSYDRFIWGFKLKPVADQQSILSLVPLFSYPSHLSPILTVAASGPIAASGSSDDTIHLYDLPSASSLGSLQQHSASVTSLSFFTPPSLSFPRNLI SADSEGYVCIFDAAPFVHLKTVRAHKKQVNDLAVHPTGKLALSVGRDDCLAMLNLVRGRRSFYCTLGKEASLVRYDWTGDKFFMATEDKVGIHEAEDAKL VAELQCPKRVLCAAPGENGLLFTGGEDRNITAWDCNSGKVAYSIEGAHESRVKGIVVLTRNDRGVDDPYLLASAASDGVIRVWDVRTSTKEKASPLAEAK TNARLTCLAGSSIKSFKRAQTADECPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	0	1
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10024142 [exp]	2.4	0.9435
AT1G74470			Pyridine nucleotide-disulphide...		Lus10008405 [exp]	2.6	0.9311
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	3.5	0.9480
AT3G53630			unknown protein		Lus10023752 [exp]	4.5	0.9410
AT5G20600			unknown protein		Lus10027609 [exp]	6.0	0.9449
AT4G11010		NDPK3	nucleoside diphosphate kinase ...		Lus10032392 [exp]	6.3	0.9242
AT1G14060			GCK domain-containing protein ...		Lus10026621 [exp]	8.1	0.9152
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10018639 [exp]	10.4	0.9409
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	10.6	0.9429
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10039497 [exp]	11.5	0.9217

Compare expression of checked genes

Lus10038299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.