Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18760 153 / 2e-48 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006729 [exp] 271 / 6e-95 AT3G18760 155 / 2e-49 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113200 [exp] 163 / 3e-52 AT3G18760 186 / 1e-61 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01250 [flax] [poplar] Ribosomal_S6 Ribosomal protein S6
Representative CDS sequence Show only first row Show all	>Lus10038301 pacid=23158346 polypeptide=Lus10038301 locus=Lus10038301.g ID=Lus10038301.BGIv1.0 annot-version=v1.0 ATGCCTCTTTACGACTGCGTGCTTCTATTGAAGCCTCAAGTGGACAGAACATCAATTATGAGTTTGATGACTCGAATAGGAAACCACGTTGCTACCAGAA ATGGCGTTGTCACTGAAGTGAAATCATTTGGAACTATTCAACTTGGTTATGGCATCAAGAAGCTCGATGGACGATTTTTCAAGGGCCAACTGGTGCAAAT GACGATGATGGCGACACCCAACATGAACAAGGAGCTTCATTACCTGAACAAGGAGGATCGGTTGCTGAGGTGGCTTCTGACGAAACACCGAAACACTGTC TACTCTCGTGACGATTACGATGAAGACACTGGAAAGAACGGACTGAAGAAATACTCGTACGGTGGGGGCATCTTAAACTTCCTCGAAAACGACGATGATG ACGTGGACGAGGACAGCGAGGATGAAGATGATGCTGGTGGCCGTAATGATGATAGACCTCGACTATGA
AA sequence Show only first row Show all	>Lus10038301 pacid=23158346 polypeptide=Lus10038301 locus=Lus10038301.g ID=Lus10038301.BGIv1.0 annot-version=v1.0 MPLYDCVLLLKPQVDRTSIMSLMTRIGNHVATRNGVVTEVKSFGTIQLGYGIKKLDGRFFKGQLVQMTMMATPNMNKELHYLNKEDRLLRWLLTKHRNTV YSRDDYDEDTGKNGLKKYSYGGGILNFLENDDDDVDEDSEDEDDAGGRNDDRPRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18760			Translation elongation factor...		Lus10038301 [exp]	0	1
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10025435 [exp]	1.4	0.9150
AT2G02570			nucleic acid binding;RNA bindi...		Lus10024458 [exp]	2.0	0.9036
AT5G58005			Cytochrome c oxidase, subunit ...		Lus10021847 [exp]	3.7	0.8702
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10023313 [exp]	3.9	0.8673
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	4.9	0.8952
AT5G59460			scarecrow-like transcription f...		Lus10004969 [exp]	5.5	0.8921
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10017877 [exp]	6.8	0.8603
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10029059 [exp]	7.1	0.8401
AT2G37120			S1FA-like DNA-binding protein ...		Lus10023177 [exp]	8.1	0.8618
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	8.9	0.8662

Compare expression of checked genes

Lus10038301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.