Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61250 422 / 3e-150 SC3 secretory carrier 3 (.1.2) AT1G11180 404 / 2e-143 Secretory carrier membrane protein (SCAMP) family protein (.1), Secretory carrier membrane protein (SCAMP) family protein (.2) AT2G20840 385 / 7e-136 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G03550 370 / 6e-130 Secretory carrier membrane protein (SCAMP) family protein (.1) AT1G32050 352 / 6e-123 SCAMP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018455 [exp] 503 / 0 AT1G61250 440 / 2e-157 secretory carrier 3 (.1.2) Lus10011229 [exp] 497 / 9e-180 AT1G61250 436 / 1e-155 secretory carrier 3 (.1.2) Lus10039794 [exp] 392 / 8e-138 AT2G20840 427 / 1e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10018562 [exp] 384 / 4e-135 AT2G20840 429 / 1e-152 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10033712 [exp] 373 / 9e-131 AT2G20840 416 / 1e-147 Secretory carrier membrane protein (SCAMP) family protein (.1) Lus10031627 [exp] 366 / 1e-127 AT2G20840 406 / 2e-143 Secretory carrier membrane protein (SCAMP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G045100 [exp] 437 / 4e-156 AT1G61250 397 / 4e-140 secretory carrier 3 (.1.2) Potri.004G036600 [exp] 431 / 2e-153 AT1G61250 357 / 3e-124 secretory carrier 3 (.1.2) Potri.019G104000 [exp] 390 / 2e-137 AT2G20840 426 / 2e-151 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.013G144700 [exp] 389 / 5e-137 AT2G20840 438 / 1e-156 Secretory carrier membrane protein (SCAMP) family protein (.1) Potri.001G134100 [exp] 382 / 6e-135 AT1G32050 399 / 8e-142 SCAMP family protein (.1) Potri.003G099300 [exp] 379 / 2e-133 AT1G32050 393 / 2e-139 SCAMP family protein (.1) Potri.004G036700 [exp] 161 / 3e-49 AT1G61250 158 / 3e-48 secretory carrier 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04144 [flax] [poplar] SCAMP SCAMP family
Representative CDS sequence Show only first row Show all	>Lus10038302 pacid=23158459 polypeptide=Lus10038302 locus=Lus10038302.g ID=Lus10038302.BGIv1.0 annot-version=v1.0 ATGGCTGGCCGCTTCGATCCCAACCCCTTCGACGAAGAGGAGGTCAATCCTTTCTCGAAAGCTCCTGCTTCAAACTCGAGGCTTTCACCGCTTCCACACG AGCCTGCAGGTTTTGGCTATAACCATGGTGCAACAGTTGACATTCCTATTGATTCAGCTAAGGACTTGAAATCAAAAGAGAGAGAACTGCAGGCTAAGGA GGCTGAACTTCGGAGGAGGGAACAGGATATAAAACGACGGGAAGATGCTGCTGCTAGAGCTGGAATAACCCTGGAGCAGAAAAACTGGCCGCCTTTTTTT CCAATTATCCACCATGACATATCAAATGAAATACCAGTTCACCTCCAAAGGATTCAGTATGTTGCCTTTTCAACGTTCTTAGGATTGGCTCTCTGCCTTC TGTGGAATATCATTGCCGTTACAACAGCGTGGATCAAGATTGATGGGGTCAAGATATGGTTTCTTGCCATCATCTACTTCATGTCAGGAGTTCCAGGAGC CTACTTCTTGTGGTATCGGCCACTTTATCGGGCATTCCGGACTGACAGTGCTCTGAAGTTCAGCTGGTTTTTCCTCTTCTACCTTATTCATATCGGCTTC TGCATCATTGCTGCAGTTGCTCCCCCGATATTCTTCAAAGGAAAGTCTCTCACAGGTGTTTTGGCTGCAATTGATGTTATAGGAGATAGCCTTCTAGTTG GGATCTTCTACTTCGTCGGGGTCGGTCTCTTCTGCGTCGAAACAATCCTCAGCATCTGGGTTCTTCAGCAAGTATACATGTACTTCCGGGGTAGCGGTAA GGCTGCAGAGGTGAGGCACGAAGCAGCAAGAGGAGCAGCGAGGGCAGCATTTTGA
AA sequence Show only first row Show all	>Lus10038302 pacid=23158459 polypeptide=Lus10038302 locus=Lus10038302.g ID=Lus10038302.BGIv1.0 annot-version=v1.0 MAGRFDPNPFDEEEVNPFSKAPASNSRLSPLPHEPAGFGYNHGATVDIPIDSAKDLKSKERELQAKEAELRRREQDIKRREDAAARAGITLEQKNWPPFF PIIHHDISNEIPVHLQRIQYVAFSTFLGLALCLLWNIIAVTTAWIKIDGVKIWFLAIIYFMSGVPGAYFLWYRPLYRAFRTDSALKFSWFFLFYLIHIGF CIIAAVAPPIFFKGKSLTGVLAAIDVIGDSLLVGIFYFVGVGLFCVETILSIWVLQQVYMYFRGSGKAAEVRHEAARGAARAAF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10038302 [exp]	0	1
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10018849 [exp]	6.2	0.5871
AT3G29770		ATMES11	ARABIDOPSIS THALIANA METHYL ES...		Lus10013193 [exp]	25.6	0.5513
AT4G36210			Protein of unknown function (D...		Lus10041814 [exp]	31.1	0.5455
AT5G03330			Cysteine proteinases superfami...		Lus10001404 [exp]	35.7	0.5451
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10012822 [exp]	51.3	0.5172
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024848 [exp]	67.0	0.4733
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10027014 [exp]	75.7	0.5024
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029681 [exp]	96.1	0.4564
AT2G17220		Kin3	kinase 3, Protein kinase super...		Lus10001392 [exp]	102.2	0.4874
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10012751 [exp]	126.8	0.4724

Compare expression of checked genes

Lus10038302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.