Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61240 506 / 6e-179 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G11170 494 / 5e-174 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G12840 372 / 1e-126 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 342 / 5e-115 Protein of unknown function (DUF707) (.1) AT3G27470 249 / 2e-78 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 244 / 6e-77 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G08040 243 / 1e-76 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G24570 243 / 2e-76 Protein of unknown function (DUF707) (.1) AT1G67850 243 / 3e-76 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G13000 238 / 3e-74 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006728 [exp] 815 / 0 AT1G61240 533 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10011228 [exp] 615 / 0 AT1G61240 507 / 4e-177 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10018456 [exp] 606 / 0 AT1G61240 504 / 1e-178 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10041107 [exp] 315 / 1e-104 AT4G12840 416 / 7e-145 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10036434 [exp] 309 / 1e-101 AT4G12840 402 / 9e-139 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10002141 [exp] 308 / 7e-95 AT1G53140 1204 / 0.0 Dynamin related protein 5A (.1) Lus10008748 [exp] 241 / 3e-77 AT4G12840 294 / 7e-99 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10003659 [exp] 244 / 7e-77 AT3G27470 563 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10011414 [exp] 244 / 1e-76 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G036800 [exp] 589 / 0 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.011G045300 [exp] 587 / 0 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.014G175800 [exp] 358 / 1e-121 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.004G227700 [exp] 357 / 4e-121 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 343 / 1e-115 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1) Potri.019G053000 [exp] 334 / 5e-112 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.017G065200 [exp] 248 / 2e-78 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.008G185600 [exp] 241 / 8e-76 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.010G047200 [exp] 241 / 1e-75 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 235 / 1e-73 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10038303 pacid=23158114 polypeptide=Lus10038303 locus=Lus10038303.g ID=Lus10038303.BGIv1.0 annot-version=v1.0 ATGACGTCTCTCAGGCCATGGAAATCAAGAGCTGCCATAGTCGATGGGGGGAAATGTGGATTAAAGGTTACGCAGCTGCCGATGATGGTAGCTCTGTGTA CAACCATGTTGTTTATTGTGTATAGAACCACTCTTTATCAGTATGAACAAACGGAGATTGAGGGGAAGTTGCATCCCTTTGACTCAATAAAGGAATCAGC TTTGGCTTCTGGATTGTTGAGTAATCTGCCTCGTGGTATAGTGCGACCACATTCAGATATGGAGATGAAGCCTTTATGGTCGTCGGGTAGCTCAAGATCG AAGACAGAAGATAATGCTTCTAGTCATCACTACCTATTGGCAATGTCTGTTGGCATTAATCAGAAGAGCCATATTGACACAGTTGTCCAGAAGTTTCTTC CAGAGAATTTTACAGTTATGTTATTCCATTATGATGGTAATATGGATGGATGGTGGGATCTTGAATGGAGTACCAAGGCTGTACACATAGTTGCTCATAA TCAAACGAAATGGTGGTTTGCAAAACGATTTCTGCATCCAGCTGTAGTGTCTATATATGATTACATATTCCTTTGGGATGAAGACCTTGGGGTGCAAAAT TTTGATCCAGGAAGGTACTTGGATATTGTAAGAGCTGAAGGATTAGAGATATCTCAGCCTGCTCTAGACCCTAATTCTACTGAGATACATCATAGAATCA CCATCCGTGCCAGAACGAAGAAAAGGGTCTATGATGTTAGAGGCAACATTAAGTGTTCGGAAGCCAGTGAGGGGCCACCATGCACTGGATTTGTAGAGGG AATGGCTCCGGTCTTTTCAAGATCTGCATGGTATTGTGCTTGGCATCTCATACAGAACGATCTAGTCCATGGATGGGGGATGGACATAAAACTGGGATAT TGCGCACAGGGTGATCGAACAAAGAATGTGGGAATAGTTGATAGTGAGTATGTTGTTCATAAAGCAATTCAAACATTGGGTGGGGGCAGTGGAACCCCAG AAAAGAAGGTTTCGAGCAATGACGAATCGACAACCAAGGTAACCTTTACAATGAAATGCATTTGTTCCTCTCATTGTTTCTCTTCTCTGATCACTTTCCA TCTTCAGCAGAAGCACAGTGGCGTGGATCCTCGGATGGAGATTCGGAGGCAATCGACGTGGGAGCTTCAGGTATTTAAAAACCGTTGGAACAAAGCCATA AGAGAAGACAAGTTCTGGGCAGACCCTTTTAGAAGCATACGTCGTCAGAAATCGGGATGGCTCGAGAAGGAGAAGCGCAGGCACAGTCAATAA
AA sequence Show only first row Show all	>Lus10038303 pacid=23158114 polypeptide=Lus10038303 locus=Lus10038303.g ID=Lus10038303.BGIv1.0 annot-version=v1.0 MTSLRPWKSRAAIVDGGKCGLKVTQLPMMVALCTTMLFIVYRTTLYQYEQTEIEGKLHPFDSIKESALASGLLSNLPRGIVRPHSDMEMKPLWSSGSSRS KTEDNASSHHYLLAMSVGINQKSHIDTVVQKFLPENFTVMLFHYDGNMDGWWDLEWSTKAVHIVAHNQTKWWFAKRFLHPAVVSIYDYIFLWDEDLGVQN FDPGRYLDIVRAEGLEISQPALDPNSTEIHHRITIRARTKKRVYDVRGNIKCSEASEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDIKLGY CAQGDRTKNVGIVDSEYVVHKAIQTLGGGSGTPEKKVSSNDESTTKVTFTMKCICSSHCFSSLITFHLQQKHSGVDPRMEIRRQSTWELQVFKNRWNKAI REDKFWADPFRSIRRQKSGWLEKEKRRHSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61240			Protein of unknown function (D...		Lus10038303 [exp]	0	1
AT2G29560		ENOC	cytosolic enolase (.1)		Lus10040711 [exp]	4.9	0.7725
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005709 [exp]	16.3	0.8228
AT4G00350			MATE efflux family protein (.1...		Lus10014760 [exp]	18.7	0.8063
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10039195 [exp]	30.0	0.7783
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	31.3	0.7975
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10021800 [exp]	39.5	0.7922
AT1G07120			unknown protein		Lus10031293 [exp]	43.2	0.7740
AT2G29560		ENOC	cytosolic enolase (.1)		Lus10016447 [exp]	43.7	0.7030
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10020758 [exp]	44.1	0.7948
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	48.4	0.7958

Compare expression of checked genes

Lus10038303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.