Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67480 41 / 0.0003 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G60570 41 / 0.0004 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G03000 41 / 0.0005 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033709 [exp] 184 / 7e-59 ND / Lus10023608 [exp] 46 / 1e-05 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 42 / 0.0002 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 42 / 0.0002 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G046100 [exp] 262 / 7e-87 AT1G16250 89 / 3e-19 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G037400 [exp] 261 / 2e-86 AT1G16250 93 / 7e-21 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G077800 [exp] 54 / 3e-08 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.019G042100 [exp] 53 / 6e-08 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 45 / 2e-05 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.017G000700 [exp] 44 / 7e-05 AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 43 / 9e-05 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.007G147000 [exp] 41 / 0.0004 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10038304 pacid=23158266 polypeptide=Lus10038304 locus=Lus10038304.g ID=Lus10038304.BGIv1.0 annot-version=v1.0 ATGGTTAACTTGGGAGACTCCATCTACGTTATTGGTGGACGCGTGGTGCGGAGGGAGAGATCTTGGAGTGCCCGTGGTGGAGAAGAATTCGAGGAGGTGG AGATCGAGGTGCGCCCGACGGTTCTTCGTTATAATAGTCGGCTTTCGAACATGAATGTCATGAGGTACAAATGCGCTGGCGTGACGTGGAAAGGAAAGAT CTACGTGGTCGGAGGGTTCGCTTCTCGACGCGATTCAGGGAAAACAGAGTCGTTTATCATGGAACGAAGCTCTGCTGAGGTGTACGACACTAGGACGGGT ACATGGAGGGTGATTGTGGGGATGTGGCAGTTGGACGTGCCACCCAATGAGATCGTGGCGGTCAACGTGAGGTTGTTTAGCTCCGGCGATTGCTTGAAAC CGTGGAAGGGACACATTGAAGCTTACGACGGAAATCTTAACTTGTGGAATGTGGTCGACGGTTCGCACTTGAGTACTTCCAACGCTCCGAGCCAACGAGT GTATCTCACCATGGCGCCGATTAAGAGCCGTCTATATTTTTTAGGAGGCTATCGAACGACTGAAGAGTTTCCACGTACGCTATCGAGGGTCCACGTTTAC GACACGTCAACAACAAATGGTCAATGGATGAGGTTAGAACCCATCGAAGAGGAAGGAAAGAAGGAGCTTTGTAGCCATTGTTGTGTGGTTCGAGTTTCTA ATTGA
AA sequence Show only first row Show all	>Lus10038304 pacid=23158266 polypeptide=Lus10038304 locus=Lus10038304.g ID=Lus10038304.BGIv1.0 annot-version=v1.0 MVNLGDSIYVIGGRVVRRERSWSARGGEEFEEVEIEVRPTVLRYNSRLSNMNVMRYKCAGVTWKGKIYVVGGFASRRDSGKTESFIMERSSAEVYDTRTG TWRVIVGMWQLDVPPNEIVAVNVRLFSSGDCLKPWKGHIEAYDGNLNLWNVVDGSHLSTSNAPSQRVYLTMAPIKSRLYFLGGYRTTEEFPRTLSRVHVY DTSTTNGQWMRLEPIEEEGKKELCSHCCVVRVSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038304 [exp]	0	1
AT2G04305			Magnesium transporter CorA-lik...		Lus10035643 [exp]	5.5	0.8066
					Lus10029758 [exp]	8.5	0.7702
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017345 [exp]	9.5	0.7809
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	11.3	0.7718
AT1G69630			F-box/RNI-like superfamily pro...		Lus10011410 [exp]	11.4	0.7806
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	12.6	0.7340
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10043327 [exp]	14.1	0.7704
AT2G34930			disease resistance family prot...		Lus10039523 [exp]	17.0	0.6701
					Lus10025782 [exp]	17.9	0.7669
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	18.8	0.7586

Compare expression of checked genes

Lus10038304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.