Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08370 490 / 1e-173 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 464 / 3e-163 ATAGAL1 alpha-galactosidase 1 (.1) AT3G56310 434 / 3e-151 Melibiase family protein (.1.2) AT3G26380 102 / 2e-23 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036176 [exp] 696 / 0 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10024401 [exp] 486 / 1e-171 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 484 / 1e-171 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 450 / 1e-157 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 442 / 2e-154 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10018260 [exp] 437 / 1e-152 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10029046 [exp] 434 / 4e-151 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10034218 [exp] 434 / 2e-150 AT3G56310 646 / 0.0 Melibiase family protein (.1.2) Lus10017365 [exp] 367 / 6e-125 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038100 [exp] 597 / 0 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.018G152200 [exp] 486 / 1e-171 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 475 / 1e-167 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 459 / 6e-161 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.019G056700 [exp] 439 / 7e-153 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.008G185300 [exp] 92 / 5e-20 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 88 / 1e-18 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 85 / 1e-17 AT3G26380 815 / 0.0 Melibiase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10038305 pacid=23158507 polypeptide=Lus10038305 locus=Lus10038305.g ID=Lus10038305.BGIv1.0 annot-version=v1.0 ATGATGGGTTCAATGAATGTCAGCTATGGCAACCAACAGATGGAGGAGTATAGGCAGTTCCTCCTTGCTAATGGCGTTGCTCTTACACCTCCAATGGGCT GGAATAGCTGGAACCATTTCCAGTGCAATGTTGATGAACACATGGTTAAATCCACTGCTGATGCACTGGTTTCAACTGGTTTGGCAGCACAAGGTTACAG ATATGTCAACATTGATGATTGCTGGGGTGAACAAGAGAGAGATAGCAAGGGTAAAATGAGAGCAAACTCAACTACATTCCCTTCTGGAATAAAGGCCCTT TCTGATTATGTCCATTCCAAAGGTCTTAAACTTGGCATATACTCTGATGCTGGATTCAGAACCTGCAGCAAGAAAATGCCAGGCTCTCTTCATCATGAGG AGCAAGATGCCAGAACCTTTGCTGAATGGGGTATTGACTACTTGAAGTATGATAACTGCTACCACGATGGCTCCAAACCTCATATCAGATATGCTAAGAT GAGTTCTGCTCTTCTCAAGGTTGGCCGACCAATACTTTACTCCATATGTGAATGGGGACAAGAAGACCCTGCGAAATGGGCTGGCCAATATGGTAACGCT TGGAGAACTACCGGGGATATCAACGACACTTGGGCAAGTATGATATCAAATGCGGATCAAAACAACATATGGGGGAGATATGCAGGGCCAGGGAGATGGA ATGATCCTGATATGTTGGAAGTAGGAAATGGAGGGATGAGCTTGGAGGAATACCGTTCCCATTTCAGTATATGGTCGCTAATGAAAGCTCCATTGCTCAT TGGTTGCGATGTTCGAACTGCAAGTAAAGGGACACTCAGTATTCTTGGGAACAAGGAGGTGATAGAGGTGAATCAAGATCCTCTTGGAGTTCAAGGGAGG AAAATTAGATCAAAAGCAGGCCTTGAGATATGGGCAGGGCCATTGTCAAGAAAAAGAATGGCAGTAGTGCTCTGGAACAAGAGCAAGTCCAAGGCTATAA TCTCAGTTAGGTGGAGGGAAATTGGGTTTCTCCAGAGACTCCACTCACTATTAGGAACTTGTGGGCTTTACATCGCCGTCCTCGATCCCTCCGAAACAGA ATATTCTGTCGTGCCACCACCGACGGTGAACCCAACTACTGTAGTTAGCCGAGTGAGTTTCCATACTTTGGTATTAGTTTGA
AA sequence Show only first row Show all	>Lus10038305 pacid=23158507 polypeptide=Lus10038305 locus=Lus10038305.g ID=Lus10038305.BGIv1.0 annot-version=v1.0 MMGSMNVSYGNQQMEEYRQFLLANGVALTPPMGWNSWNHFQCNVDEHMVKSTADALVSTGLAAQGYRYVNIDDCWGEQERDSKGKMRANSTTFPSGIKAL SDYVHSKGLKLGIYSDAGFRTCSKKMPGSLHHEEQDARTFAEWGIDYLKYDNCYHDGSKPHIRYAKMSSALLKVGRPILYSICEWGQEDPAKWAGQYGNA WRTTGDINDTWASMISNADQNNIWGRYAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWSLMKAPLLIGCDVRTASKGTLSILGNKEVIEVNQDPLGVQGR KIRSKAGLEIWAGPLSRKRMAVVLWNKSKSKAIISVRWREIGFLQRLHSLLGTCGLYIAVLDPSETEYSVVPPPTVNPTTVVSRVSFHTLVLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038305 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	3.2	0.9229
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10038780 [exp]	7.1	0.8440
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	7.1	0.9055
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	7.7	0.8685
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10011484 [exp]	8.4	0.8790
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10016545 [exp]	8.6	0.8539
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10018503 [exp]	9.0	0.8595
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	9.2	0.8904
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018165 [exp]	10.2	0.8600
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	10.2	0.8942

Compare expression of checked genes

Lus10038305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.