Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56770 100 / 1e-25 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G68810 100 / 1e-24 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 97 / 3e-23 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT2G40200 94 / 8e-23 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41130 86 / 6e-20 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G38070 70 / 2e-13 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G32640 57 / 2e-09 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 57 / 2e-09 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT2G46510 57 / 4e-09 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G17880 56 / 1e-08 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036175 [exp] 294 / 4e-102 AT3G25710 75 / 3e-16 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10013917 [exp] 181 / 3e-56 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001885 [exp] 156 / 1e-46 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 106 / 4e-27 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 105 / 9e-27 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10018020 [exp] 104 / 2e-26 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 100 / 2e-25 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007502 [exp] 97 / 4e-24 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035056 [exp] 99 / 5e-24 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G089000 [exp] 278 / 2e-94 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G117600 [exp] 247 / 4e-82 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G065500 [exp] 179 / 4e-56 AT1G68810 113 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G055700 [exp] 179 / 1e-55 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 108 / 1e-27 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 106 / 1e-27 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 105 / 2e-27 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 105 / 2e-26 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 100 / 2e-25 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 98 / 2e-24 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038306 pacid=23158474 polypeptide=Lus10038306 locus=Lus10038306.g ID=Lus10038306.BGIv1.0 annot-version=v1.0 ATGGAGGAGCCTAATTCTACGATCTTAGTACGAAAGTCCTGTCATATGGAAGGGAATTATTGCGATGGGATGGGTTCATCATCCGCTTTGGTTTTGGACG GTGAGAGGGGGGAGCTAGTGGAGGCTAGCGTAGTGAGAGTGGAAAAGAAGGAAGTGGCTCATGAGAGAAGCACTCTGGCTTTGAAGAATCATTGTGAAGC TGAGAGGAAGCGTAGAGCCAGGATCAATTCCCATCTCGATACTCTCAGGACTCTTTTACCTGATGCCCATAAGATGGACAAGGCATCACTCCTGGCAGAG GTTGTGAGTAATTTAAAAGAACTGAAAAGAAATGCTGCTGAAGCCAGTGAAGGCATCTTTATGCCAATGGACGTTGATGAACTAAAAGTCGAACAAGAAT TGGAGGGACCTCCGTATTTGATCAAGGCATCTTTGTGTTGCAATTTTAAGCCTGGAATTTTATCCCATCTCAGAACTGCAATTGAAACTCTACAGCTGAG TTTAATGGGGGCAGAGACTGCTACCCTGGAAGGTAGGATGAAGAATGTTTTTGTGATAGCGAGTCGAAGACAAGAAGAACACCATGAACATACTACCAAG GGGCATCATCAGCTGCTGGCAAGTTCTGTTCATCATGCTTTCAGAACCATACTGGATAATTTTTCAGCTTCGGAGGAGTTCTTACTGAAATCAGCACTCC CGAACAAGAAACGAAGAATTTCTGCGTTTGATGGTTCTTTTTCAGTGTGA
AA sequence Show only first row Show all	>Lus10038306 pacid=23158474 polypeptide=Lus10038306 locus=Lus10038306.g ID=Lus10038306.BGIv1.0 annot-version=v1.0 MEEPNSTILVRKSCHMEGNYCDGMGSSSALVLDGERGELVEASVVRVEKKEVAHERSTLALKNHCEAERKRRARINSHLDTLRTLLPDAHKMDKASLLAE VVSNLKELKRNAAEASEGIFMPMDVDELKVEQELEGPPYLIKASLCCNFKPGILSHLRTAIETLQLSLMGAETATLEGRMKNVFVIASRRQEEHHEHTTK GHHQLLASSVHHAFRTILDNFSASEEFLLKSALPNKKRRISAFDGSFSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56770	bHLH	bHLH107	basic helix-loop-helix (bHLH) ...		Lus10038306 [exp]	0	1
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10025756 [exp]	4.2	0.9189
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	5.1	0.9345
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	7.5	0.9068
AT2G17705			unknown protein		Lus10025950 [exp]	12.2	0.9036
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	13.7	0.8881
					Lus10015401 [exp]	17.0	0.8915
AT4G11660	HSF	AT-HSFB2B, HSFB...	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10038874 [exp]	18.2	0.8479
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	18.7	0.8848
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	19.1	0.8948
AT3G09010			Protein kinase superfamily pro...		Lus10011193 [exp]	19.7	0.8689

Compare expression of checked genes

Lus10038306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.