Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04980 328 / 1e-98 unknown protein AT1G11070 318 / 8e-96 unknown protein AT1G61080 297 / 4e-87 Hydroxyproline-rich glycoprotein family protein (.1) AT4G18570 90 / 2e-18 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07120 83 / 1e-16 unknown protein AT3G25690 68 / 2e-11 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G48280 67 / 4e-11 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036173 [exp] 762 / 0 AT4G04980 96 / 2e-20 unknown protein Lus10018473 [exp] 489 / 2e-158 AT4G04980 347 / 1e-104 unknown protein Lus10011209 [exp] 480 / 2e-154 AT4G04980 336 / 2e-100 unknown protein Lus10036174 [exp] 395 / 6e-133 AT4G04980 236 / 6e-73 unknown protein Lus10031636 [exp] 278 / 5e-82 AT4G04980 313 / 3e-95 unknown protein Lus10033704 [exp] 276 / 6e-81 AT4G04980 311 / 4e-94 unknown protein Lus10000986 [exp] 88 / 1e-17 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 86 / 5e-17 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 85 / 1e-16 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047100 [exp] 414 / 1e-130 AT4G04980 358 / 1e-109 unknown protein Potri.004G038400 [exp] 405 / 5e-128 AT4G04980 387 / 4e-121 unknown protein Potri.001G317001 [exp] 320 / 1e-97 AT4G04980 320 / 5e-98 unknown protein Potri.009G073600 [exp] 83 / 2e-16 AT1G07120 434 / 4e-151 unknown protein Potri.001G279000 [exp] 82 / 6e-16 AT1G07120 440 / 2e-153 unknown protein Potri.001G460300 [exp] 79 / 1e-14 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 76 / 8e-14 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.004G054900 [exp] 72 / 1e-12 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 71 / 3e-12 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G130800 [exp] 66 / 2e-10 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038307 pacid=23158364 polypeptide=Lus10038307 locus=Lus10038307.g ID=Lus10038307.BGIv1.0 annot-version=v1.0 ATGCCGAATACCCTAACCCTGCTGCAACTTGAAGAAGAAGAAAAGAAAAATGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGACGAAGACGATC ATCACGACGACAACAACAGCCACATTATCATTCCATCAACAGAAGATACCAACGAACAACAAATCTTCGTCAGCCGGAGCCGGAGCGCCACCTACCGGCT GAGAAAAGCCAGTTTGAACCTCCGTTTCCTTCTCGGGCCGCTCGCCCGGAAAAGGTCCCAACCTGCTGCTACAATGCCTACTGGGATCTTATGCGGAATC AGCCCATTTCCATCGGGACGCAAGCATTTTCATTTACATCAAGCTGAGGCAGGGAGAGGGGAATCAAGCAAGAGTGAGAAGAAGAATCAAGTTGCAGGAC CTAAACAGCAGATAGGATGGGTTCGCAGCCGCAGATCGACAACAGCTATGTTCGTCTTGATGATGGACTTACGGAAGAAGATTAACCTCTTCAGGGGAAT CTTTGACCTGCCAACTTGTGATGTCTCTGCCTCCATAAACCAACTGGTGACGGATACTATGGGTGATCTCCACAATCTCTACCCTGAAATCATGCCCATC AAAAAATTGTCAGATATCAAGCAAGGAATTTCTATTCACGAGGTTTTGATTTACCTGTGCGGAGCTTTGAGATCAGTTGGAGACTCGTGGGGGACGACGA ATCATGAATGGATGAACGAAGCTACTTTCTACAAACAGAACAACATGGACGAGTTGAGCTCCGAACAGCTAGTTGATCTTGCACTGGCAACACTCAATTG CTTAATCAAGATTCAAACAGAGGATTCCGAAGCGACCATTGAAGAATATGATCATAGCAAAGACATTGTACCATATGGGAAGTCATTGCTGAAATCGTGC TCCGAGAGCAACATTCCGTTCAGTGTAGCGTCTCCAGTGAAACCACCAACATCATTTCTTCCAGAAATAAGTTGTGATTCTCCCAAGGCCAAGGAGTTTT CCAACTTGTACTGTTCGTCGCCCCTTCTGAGGTTTTTGAGCTTTCAATCAGTAGGGAAATTGAGCCGCGTCGACATCAAAAAGCTCCCTTTCCATTTGTT CCCACATGGCATCTCTCATGGCCACCATAAGAACAATGTGAGCAAACACCGCGCTGAAGGTAAGCAGCCAGATGGGGAGCCGATATTGGAAATGGATGGA AGTCAATCCTCGGAAGGTGAAATAGACTCGGATGATGAAACTAGAGAGAGTTCAGTGACTGACACAATTCCCACAACCGTACAAGCCAAGGAATTGGCAA TGCTGTCTGAAGAGCCTATGTCTTCAGAACTGGTCTCGGAAGCATCAGTACCTCCCCCACCCCCACCTCCACAACCACCACCATCAACCACGAGGATAAA GATGCCAAGAGGTTCACAACCACCCAAACCTCCACCACTGCCTCCTTTGCATCGAGTGTCCCAACTCCAGCCACTGGCTACTGAACTGCCTCTGCAAACT CCAGTTTTGAAGTCTCAAGCAGCTACCGCAAGTATATCATTACAGCTTAGTCCACATACAGCAGAAGAAACTGAAAAACCATCTTCATCATCAGTGCCAC ATCCACCACCACCGCCGCAAAAAACATCAGATAGTGAGAAACCAACCTCATCACGTTCATCATCTCTACGTATTCCAAGAACCACACAAGCAATGCACTC TTCACCAAGTCTTCCAAGGACATCTTCAAATGGATCAGCCTCAAATTGCATGGAAGCACCCTCACAAGGAATCACTCCTCCGCCTCCTCCACCAGGTGGA GCAAAGTTGCTGCGTCCAAGGAGAGCACAAAGCAAATTGAAAAGGTCAAGCCAAATGGGTAACTTGTACAGAGCTTTGAAAGGGAAAGTAGAAGGAGGTA ATCAAATCCGAAGGCAGAATGGAAAAGGAAACCCAAATTCCAACAATGCTGGTGGAAAGCAAGGAATGGCCGATGCACTAGCGGAGATAACAAAGAGATC AGCATACTTCCAACAAATTCAAGAAGACGTCCAAACCTATGAAGAGGAAATAAATAGGCTAAAGAGAGAACTTAGCAGTTTCAAAACAAAGGACATGACA GAGTTAGTCAACTTCTACAAGTATGTCGAATCCGTTCTCGAGAATCTAACTGATGAATCACAGGTCCTAGTGAGGTTTGAAGGCTTCCCGCAAAAGAAGT TGGAAGTAACAAGATCAGCAGCAGCACTCTACTGTAAGCTAAAAGGAGTTGTTACTGACCTACAGGCATGGAAGATCGGATCCCCATTGGAACGGCTTCT TGACAGGATTGAGCGTTACTTCAGCAAGATGAACGGAGAGCTGGATGCATTCGAGAGAATTAAAGAAGAAGAATGCAAGAAGTTCAAGAGCCATAACATC GAGTTCGACCTGCAGATCCTAGTACAGATTAAAGAAGCCGTGGTGGATCTTTCATCGAATTGCATGGAATTAGCCATGAAAGAAAGGAGAGATGCTGAGA AAAGCGGAGCTCAACCTAGCAAGGCGTGTTGTAAGACGCTGTGGAGAGCGTTTCAATTCGCGTTCAGAGTGTATACCTTCGCAGGGGGACACGATGACCG CGCCGATAGACTGACGAGGGAATTGGCTAAGCAAATCGAGGAAGATTATCGTTGGATGCAAGAAAATCATCTGTAA
AA sequence Show only first row Show all	>Lus10038307 pacid=23158364 polypeptide=Lus10038307 locus=Lus10038307.g ID=Lus10038307.BGIv1.0 annot-version=v1.0 MPNTLTLLQLEEEEKKNDEEEEEEEEEEEDEDDHHDDNNSHIIIPSTEDTNEQQIFVSRSRSATYRLRKASLNLRFLLGPLARKRSQPAATMPTGILCGI SPFPSGRKHFHLHQAEAGRGESSKSEKKNQVAGPKQQIGWVRSRRSTTAMFVLMMDLRKKINLFRGIFDLPTCDVSASINQLVTDTMGDLHNLYPEIMPI KKLSDIKQGISIHEVLIYLCGALRSVGDSWGTTNHEWMNEATFYKQNNMDELSSEQLVDLALATLNCLIKIQTEDSEATIEEYDHSKDIVPYGKSLLKSC SESNIPFSVASPVKPPTSFLPEISCDSPKAKEFSNLYCSSPLLRFLSFQSVGKLSRVDIKKLPFHLFPHGISHGHHKNNVSKHRAEGKQPDGEPILEMDG SQSSEGEIDSDDETRESSVTDTIPTTVQAKELAMLSEEPMSSELVSEASVPPPPPPPQPPPSTTRIKMPRGSQPPKPPPLPPLHRVSQLQPLATELPLQT PVLKSQAATASISLQLSPHTAEETEKPSSSSVPHPPPPPQKTSDSEKPTSSRSSSLRIPRTTQAMHSSPSLPRTSSNGSASNCMEAPSQGITPPPPPPGG AKLLRPRRAQSKLKRSSQMGNLYRALKGKVEGGNQIRRQNGKGNPNSNNAGGKQGMADALAEITKRSAYFQQIQEDVQTYEEEINRLKRELSSFKTKDMT ELVNFYKYVESVLENLTDESQVLVRFEGFPQKKLEVTRSAAALYCKLKGVVTDLQAWKIGSPLERLLDRIERYFSKMNGELDAFERIKEEECKKFKSHNI EFDLQILVQIKEAVVDLSSNCMELAMKERRDAEKSGAQPSKACCKTLWRAFQFAFRVYTFAGGHDDRADRLTRELAKQIEEDYRWMQENHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11070			unknown protein		Lus10038307 [exp]	0	1
					Lus10028090 [exp]	1.0	0.9294
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	3.2	0.8717
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	3.9	0.8677
AT3G13950			unknown protein		Lus10029088 [exp]	4.9	0.8589
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10014077 [exp]	5.0	0.8597
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	5.3	0.8663
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10032911 [exp]	7.3	0.8544
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040419 [exp]	7.7	0.8239
					Lus10042417 [exp]	7.7	0.8102
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	7.9	0.8563

Compare expression of checked genes

Lus10038307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.