Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53130 390 / 1e-127 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G01340 367 / 1e-118 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT1G15990 355 / 6e-114 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT4G01010 354 / 9e-114 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT4G30560 353 / 2e-113 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT1G19780 352 / 3e-112 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT2G23980 349 / 3e-111 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT2G46430 342 / 3e-109 CNGC3.C, ATCNGC3 cyclic nucleotide gated channel 3 (.1.2) AT5G57940 332 / 4e-105 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT2G28260 326 / 4e-103 ATCNGC15 cyclic nucleotide-gated channel 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019014 [exp] 498 / 2e-162 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 474 / 3e-153 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 379 / 2e-123 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10038815 [exp] 379 / 2e-123 AT5G53130 971 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10024073 [exp] 342 / 1e-108 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10041662 [exp] 342 / 4e-108 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10022155 [exp] 337 / 1e-106 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10036260 [exp] 338 / 8e-106 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10021461 [exp] 322 / 2e-101 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G019100 [exp] 378 / 9e-123 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.012G002200 [exp] 377 / 3e-122 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 367 / 2e-118 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 363 / 6e-117 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G106100 [exp] 357 / 2e-114 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.001G043900 [exp] 349 / 2e-111 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 339 / 1e-107 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.009G010700 [exp] 326 / 9e-103 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G097600 [exp] 319 / 1e-100 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 302 / 4e-94 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038308 pacid=23158284 polypeptide=Lus10038308 locus=Lus10038308.g ID=Lus10038308.BGIv1.0 annot-version=v1.0 ATGAAGGCTACTGGAGGTGGGTGGTGGATATGGAGAACATTCCGTCGGAGAGAAAAGGCAATTCGCAGATGGAACCTGGTTTTCCTAGTGTTATGCGGAG TTGCTCTGCTGGTAGATCCTCTGTTCTTGTACATCCCACGGATCCAAAAGAGGAGGAATCAATACTACTGCATTGGGTTTGACACAAAGCTCGCAGCAGT TGCTACACTAGTCCGTTCTGCCGTAGATGCTCTCTATCTCATTCGAATCCATTTCCATCTCCGCACCGCCTTTGTCGCACCTCCGTCTACAGTTTCCGGA GCTGTTCAAGTTGTTGTAGACAGCTCTGCCATCGCCCGAAGATATTTGTATTCTTTGTTTTTCCCAGTTGACCTTCTTTCCTTGCTTCCTTTTCCCCAGG TGCTTGTATTGGTAGCATGGATGTTGAAGGAGGCGAGAGGAGCTGAAATCATGACGACTATCACGGTCTTGCAGGCAGGAGTTTTCCTTCAATGGGTACC GAGAGTACTAAGAATGTACCAACTCAACCAGGAAGTCATCAAGACTAGCTTTGCAATCAATAGAGGGGCCATTGCTAGAACTTTCATGACCATCTTCCTT TACATTGCTGCTGCTAATGTCACAAGTGCGTTCTGGTATTCACTCTCCGTGAGACAACAAATGGACTGCTGGCGAGCAGCCTGTGGCAGAAACCATTCTA CTGATAGATGCGATTACAATGCTGTAGTAACTACTTGTTGGTACGATGGAAATCCTCGGATGGATTACGCAGCAGCATCAGTGATTCTGGATCGGAGTTG TCCCAAGGGCGATTCCAATGGAGGAGTAGGAACACATTTCAATTATGGGATGTTTGCTGATGCAATTAACTCTGGTATATTGGAGTCATCCCATTTCCAC AAGAAGTTCCTCTTCTGTTTTTGGTGGGCACTTCAAAGTCTGAGCACTTTTGGCCAGAACATCAAACCAAGCGACAATAGTTGGGAGATATGCTTCGCCA TATGCATCTTTGTTTTCGGATTGCTGCTATTTTCGCTAGTCATTGCTGTCATACAGACAAGGATGTTAACGACCACAATAAGAATGGAGGAGATGAAAAT GAAATGGGAAGATGTGGACCAATGGATGACCGCCCATTTCATCCCTCACGAACTGAAGAGGCGAGTAAGGCGACACGAAGAATACAGATGGCGGAGGCAT CAGGGTATCGATTTCCACAATCTCGTCCGCAGCTTGCCCAAGGATCTCAGGAGGGACATCAATCACAATCTTTGCTTTAGTTTGATAACAAAAGTACCCA TGTTGGAGAAGCTGGAGGAGCGAAGAAAAGAGGAACTGTGCGATCGACTAAGACCAGTACTGTACACCGAAGGAAGCTGCATCATCCGAGAAGGAGACCC TCTGGACGAGATGATTTTCATTCTGAGAGGGAAGGTACGACTGTCGAGTGGTGATGATCAATTAGGTGGTGATGAGGTGTTCCTAAACAATGAAAATTTC TATGGGGAAGAACTTTTGATATGGGCATCAAGCTCCCATCACGGGCTGCTTCCTTCCTCTTCTTCTTCTCCTACTCATACAATGAGAATCCCGGTTTCGT CCAAGACCTGCACTACGGTTACTGAAGTTGAGGCCTTTGTTTTATCTGCAGCAGACTTGAGGTCATGTATTCATAACAACGTTGTTTCTTCCCAGCTTGG GTTGTACGAGAAGGATCCCATTCGTTGGAAATCAATTTGA
AA sequence Show only first row Show all	>Lus10038308 pacid=23158284 polypeptide=Lus10038308 locus=Lus10038308.g ID=Lus10038308.BGIv1.0 annot-version=v1.0 MKATGGGWWIWRTFRRREKAIRRWNLVFLVLCGVALLVDPLFLYIPRIQKRRNQYYCIGFDTKLAAVATLVRSAVDALYLIRIHFHLRTAFVAPPSTVSG AVQVVVDSSAIARRYLYSLFFPVDLLSLLPFPQVLVLVAWMLKEARGAEIMTTITVLQAGVFLQWVPRVLRMYQLNQEVIKTSFAINRGAIARTFMTIFL YIAAANVTSAFWYSLSVRQQMDCWRAACGRNHSTDRCDYNAVVTTCWYDGNPRMDYAAASVILDRSCPKGDSNGGVGTHFNYGMFADAINSGILESSHFH KKFLFCFWWALQSLSTFGQNIKPSDNSWEICFAICIFVFGLLLFSLVIAVIQTRMLTTTIRMEEMKMKWEDVDQWMTAHFIPHELKRRVRRHEEYRWRRH QGIDFHNLVRSLPKDLRRDINHNLCFSLITKVPMLEKLEERRKEELCDRLRPVLYTEGSCIIREGDPLDEMIFILRGKVRLSSGDDQLGGDEVFLNNENF YGEELLIWASSSHHGLLPSSSSSPTHTMRIPVSSKTCTTVTEVEAFVLSAADLRSCIHNNVVSSQLGLYEKDPIRWKSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	0	1
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10036952 [exp]	3.2	0.7524
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	3.6	0.7754
AT3G04950			unknown protein		Lus10000934 [exp]	4.2	0.7553
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10018318 [exp]	4.9	0.7473
AT1G63610			unknown protein		Lus10016008 [exp]	4.9	0.7683
AT5G35870			unknown protein		Lus10001176 [exp]	5.0	0.6904
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	8.2	0.7138
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	8.9	0.7541
AT1G28100			unknown protein		Lus10001800 [exp]	10.2	0.7414
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	24.9	0.7292

Compare expression of checked genes

Lus10038308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.