Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022836 [exp] 538 / 0 ND / Lus10005392 [exp] 427 / 1e-142 ND / Lus10024122 [exp] 424 / 2e-141 ND / Lus10029057 [exp] 401 / 2e-132 ND / Lus10024121 [exp] 354 / 3e-114 ND / Lus10006341 [exp] 315 / 2e-101 ND / Lus10005393 [exp] 308 / 5e-98 ND / Lus10008536 [exp] 297 / 1e-95 ND / Lus10023559 [exp] 288 / 2e-89 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387900 [exp] 533 / 0 ND / Potri.001G388450 [exp] 514 / 6e-177 ND / Potri.001G388600 [exp] 509 / 2e-175 ND / Potri.001G388801 [exp] 509 / 3e-175 ND / Potri.011G047300 [exp] 509 / 6e-175 ND / Potri.001G388200 [exp] 501 / 3e-172 ND / Potri.011G108300 [exp] 497 / 1e-170 ND / Potri.001G388100 [exp] 491 / 6e-169 ND / Potri.001G388900 [exp] 455 / 5e-154 ND / Potri.011G108200 [exp] 444 / 6e-150 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0122 [flax] [poplar] UTRA PF12143 [flax] [poplar] PPO1_KFDV Protein of unknown function (DUF_B2219) CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10038309 pacid=23158246 polypeptide=Lus10038309 locus=Lus10038309.g ID=Lus10038309.BGIv1.0 annot-version=v1.0 ATGTCTGTTTCTCCGGTCACCGGAGCCATTTTCGGCGGCCCTCATTATTCTCTCAGCCCAAGCTTACATGTCAACCCAAAATTTCCCCAACTATCTGCGT TTCGAAGCAAAACTCGTCCGCTTCGTGTCACCAAAATATCATGCACTGCATCCAAGGGCAACCAAGATGATGAAAAAGTGCCTACTTCTCGAAGAGACCT CCTCATAGGAATGGGAGGGTTGTATGGTGCAGTCGGGTCATCATCACTCTCCTCCGATGGCGCTGTCTATGCTGCTCCGGTCCCTCCGCCGGATCTCACC AAATGTACCGTCACTAGTGTCGGTCCGGAGAGCGTCCAATGTTGTCCACCATTCAACGGCCAAAATAAGATCACTGACTTCAAGCTGCCATCATCAAGGG AACAGGTCAGGATCCGACCCGCGGCCCATCTAGTCAACAAGTCCTACATACAAAAATATGAACGAGCCATCCAACTCATGAAGTCTCTCCCAGACGATGA CCCAAGAAGTTTCAAGCAACAAGCGAACATCCATTGCGCCTATTGCAACGGGGCCTACATCCAGACCGGGTTTCCAGACGCCCGGTTCGAGGTCCATTCA TCCTGGCTTTTTTTCCCCTTCCACCGTTTTTACCTCCACTTTTTCGAGCGGATCCTGGGTAAACTCATCGGCGACCCGACCTTCGCCCTCCCGTATTGGA ACTGGGACAACCCGCCGGGTATGTCCATTCCGTCATTTTTCATGAACCCTAACTCCCCGCTCCACGACCCGATCCGAAACCCTGACCACCAGGAGTCGGT TTTGCTGGACATGGACTGGAGCGACGAGGTGGACAGTTCCTCGCCGGAGGAGCAATACAAGACGAACCTAAGCTTGATGCACACACAAATGGTGACCGGA GCATCGAAAGCATCGTTGTTCTTCGGTTCTGCATTGAAGGCCGGAGATAACGTGACCCAGATGAGCAGTCAAGGGACGATCGAGGCGACACCTCATGGGA TCGTTCATGTTTGGATGGGTGACTGGACCAATCAGCCTAACGGCGAAAATATGGGGACGTTATATTCTGCAGCTCGTGACCCCATTTTTTACAGTCATCA CGCCAACGTGGACAGGATGTGGAACCTCTGGAAGACCGTGGGCCCCAACAGGAAGGATATATCCGACCCGGATTGGTTGGAGTCAGCTTTTGTGTTCTAT GACGAGGATAAGAATTTGGTGAGGTGTAAGATTAAGGACTGCATTGACTCGAGAAAGCAGCTCAAATACGATTACCAACAGGTACCAATCCCATGGCAAA AAACAACGACAACCCCAAAGGCAACGAGAAAAACAGTGGCTAGCGCTTTCGGAGCAGAGAAATCAGCAAATGCAGCGGGGCACCGGTTGAGGAAGAAGCG GGAGCTGACCCCAATATCTGCATTCCCGCTTGTGTTAAACAAGTCGATAAGCGTAATGGTGCCTAGGCCGAAGAAGTCTCGAAATGCGTCCGAAAAGAAG GACGAGGAGGAAGTGGTGGTGGTGGAAGGAATCGAGCTTGATCTAGGAAAAGTAGTGAAGTTTGACGTGGCGGTCAATGATGAGGACGATGGGCCCCCTG CAGGGCCCCAGGATACAGAATTTGCAGGGACGTTTGTTAACGTCCCGCACAAGAAGAAGTCCGGGGGTGCCTCAACGTGTAAGACGTCGTTGAGGTTAGG AATAACTTCACTGTTGGATGATCTGGATGTGGATGGCGATGACACGATTATCGTGACTTTGACACCCAAGGTTGGGGAGGTGAAGATCGGCGGAGTGAAG ATTGATTACATCACTGAGTGA
AA sequence Show only first row Show all	>Lus10038309 pacid=23158246 polypeptide=Lus10038309 locus=Lus10038309.g ID=Lus10038309.BGIv1.0 annot-version=v1.0 MSVSPVTGAIFGGPHYSLSPSLHVNPKFPQLSAFRSKTRPLRVTKISCTASKGNQDDEKVPTSRRDLLIGMGGLYGAVGSSSLSSDGAVYAAPVPPPDLT KCTVTSVGPESVQCCPPFNGQNKITDFKLPSSREQVRIRPAAHLVNKSYIQKYERAIQLMKSLPDDDPRSFKQQANIHCAYCNGAYIQTGFPDARFEVHS SWLFFPFHRFYLHFFERILGKLIGDPTFALPYWNWDNPPGMSIPSFFMNPNSPLHDPIRNPDHQESVLLDMDWSDEVDSSSPEEQYKTNLSLMHTQMVTG ASKASLFFGSALKAGDNVTQMSSQGTIEATPHGIVHVWMGDWTNQPNGENMGTLYSAARDPIFYSHHANVDRMWNLWKTVGPNRKDISDPDWLESAFVFY DEDKNLVRCKIKDCIDSRKQLKYDYQQVPIPWQKTTTTPKATRKTVASAFGAEKSANAAGHRLRKKRELTPISAFPLVLNKSISVMVPRPKKSRNASEKK DEEEVVVVEGIELDLGKVVKFDVAVNDEDDGPPAGPQDTEFAGTFVNVPHKKKSGGASTCKTSLRLGITSLLDDLDVDGDDTIIVTLTPKVGEVKIGGVK IDYITE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038309 [exp]	0	1
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10001968 [exp]	6.9	0.8973
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10031059 [exp]	8.7	0.8836
					Lus10008694 [exp]	11.8	0.8491
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	13.9	0.8920
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	14.4	0.8879
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10010109 [exp]	16.0	0.8406
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10021428 [exp]	17.0	0.8827
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	22.3	0.8848
					Lus10008695 [exp]	23.1	0.8291
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	26.7	0.8650

Compare expression of checked genes

Lus10038309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.