Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55370 109 / 5e-28 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT1G51700 105 / 9e-28 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT1G28310 107 / 2e-27 DOF AtDof1. 4 Dof-type zinc finger DNA-binding family protein (.1.2) AT5G60200 105 / 4e-27 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G07640 105 / 4e-27 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT3G61850 104 / 1e-26 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT3G21270 101 / 3e-26 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT2G28810 104 / 4e-26 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT2G28510 103 / 5e-26 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT3G50410 102 / 5e-26 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036172 [exp] 451 / 5e-163 AT3G55370 109 / 3e-28 OBF-binding protein 3 (.1.2.3) Lus10034652 [exp] 107 / 2e-27 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10017882 [exp] 106 / 3e-27 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10023032 [exp] 106 / 7e-27 AT1G64620 171 / 1e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10033218 [exp] 106 / 8e-27 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10016566 [exp] 106 / 1e-26 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10042114 [exp] 100 / 1e-26 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10015425 [exp] 104 / 2e-26 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10003207 [exp] 105 / 3e-26 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047500 [exp] 162 / 1e-48 AT1G07640 106 / 1e-26 Dof-type zinc finger DNA-binding family protein (.1.2.3) Potri.004G038800 [exp] 132 / 5e-37 AT1G51700 104 / 7e-27 DOF zinc finger protein 1 (.1) Potri.011G055600 [exp] 112 / 8e-29 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.004G046600 [exp] 111 / 8e-29 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.015G048300 [exp] 109 / 5e-28 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.005G134200 [exp] 107 / 1e-27 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.012G063800 [exp] 108 / 2e-27 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.015G009300 [exp] 106 / 2e-27 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G034200 [exp] 105 / 2e-27 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1) Potri.007G038100 [exp] 107 / 3e-27 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10038310 pacid=23158240 polypeptide=Lus10038310 locus=Lus10038310.g ID=Lus10038310.BGIv1.0 annot-version=v1.0 ATGGGTTTGAGAACAAAACAAGTTTCCAAAGACTTAGTTCTCGACTGGAGCCAGAGCACCCTAGTTAATCCTCCTCCAGATCAGACGGCCAGAAAGCAAC ATCAGAAGAATCCTGATCAGAACCAGAGCCGATCTGAGCCGCTGAATTGTCCAAGATGCGACTCCACCAACACCAAATTCTGCTACTTCAACAACTACAA CAAGTCCCAGCCTAGGCACTTCTGTAAAGCATGCAAACGCCATTGGACCAAAGGCGGGACCTTACGGAACGTTCCGGTAGGTGGCGGCCGGAAGAACAAG CGTTTCTCTAACCCCAACGGCGGCAACAACATCGGTAAGATTATAAACAAGGTCAGTCCCAAAATGGTAATTCAAGCTCATCAGAGGCCGAAACAGAGCA TCCAAGAAAACAGAGCATGTCCGAACGACGTCGTTTTGCAAAGATTGATGACTACCTCCCCTCTGCCGCCGCCGGAGATTGGCGCCGGCGTTAACTTCAC CTGCGGCGAAATGGGTTCCTCGATATTCGCTCAAGGTTTGAGCTTCACCTACTCTGCCGCCGGTTTCGAGTTCCCGGGTTCAAGCTCTGCAACTGCCACG TGGCAAGTGCCCAGTACGATCAGCGACGAGAAGAGCATGGTGATCGACGACGTCGTAGCGACGACGGCGAACGACGCGTCGTATTGGAATTGGGATGATA TGGATAGCTTCGTCTCTGGTGCGGATCTCAACATCCCATGGGATGTTGATGATTCCGAGGTTAAACCTTAA
AA sequence Show only first row Show all	>Lus10038310 pacid=23158240 polypeptide=Lus10038310 locus=Lus10038310.g ID=Lus10038310.BGIv1.0 annot-version=v1.0 MGLRTKQVSKDLVLDWSQSTLVNPPPDQTARKQHQKNPDQNQSRSEPLNCPRCDSTNTKFCYFNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNK RFSNPNGGNNIGKIINKVSPKMVIQAHQRPKQSIQENRACPNDVVLQRLMTTSPLPPPEIGAGVNFTCGEMGSSIFAQGLSFTYSAAGFEFPGSSSATAT WQVPSTISDEKSMVIDDVVATTANDASYWNWDDMDSFVSGADLNIPWDVDDSEVKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10038310 [exp]	0	1
AT4G22250			RING/U-box superfamily protein...		Lus10035335 [exp]	6.6	0.8023
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10029102 [exp]	6.9	0.7628
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Lus10038888 [exp]	9.5	0.7975
AT5G24580			Heavy metal transport/detoxifi...		Lus10015583 [exp]	10.7	0.7903
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	12.7	0.7791
AT4G03965			RING/U-box superfamily protein...		Lus10029993 [exp]	14.4	0.7927
AT2G38610			RNA-binding KH domain-containi...		Lus10021676 [exp]	16.9	0.7645
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	17.9	0.7810
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10037758 [exp]	18.0	0.7499
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	19.1	0.7682

Compare expression of checked genes

Lus10038310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.