Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77270 45 / 6e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029729 [exp] 62 / 5e-10 AT1G77270 73 / 4e-13 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038311 pacid=23158145 polypeptide=Lus10038311 locus=Lus10038311.g ID=Lus10038311.BGIv1.0 annot-version=v1.0 ATGTCGTTTCGGAGTTCAACAGGAAAAGATGTAGGATTAATGCTAGAAGCAGAAGATCCTTGGGTTATCAAGAGAAAGGGTCGCTGGGTTAGGGAAAGTC CCGATCTTTATGCACAACCTCATGAAGATGCAACCAAGCTTCATGTTAGTGCCAAACAATCAGTTATTGAGATTTCCTCTGATGATGATGATGGAAATGT TCGTAGCCTTGTTGAGTGTTCTGATAATCGATATGAGATGTTCCTAGCTAGTATGAAACCACAAGGGACTTCATCCTTTCTTGATTGTTGTCCAAATGGA GGCCGAATTCGCAAAGGTGGAAAAGACAGGAACTTTCAAGGCACCAAAGAGAGAAACATCAAAGCTAAGGACAGACAGAAATGTGAAGTAGCTTTGAATC CCATTACTTGTAAGCAGTTTCCTGATAAAGGTAAACGAGAGATGGACATATGTAATCCGGTTTCTCAGAAACGAAGCGGTGGAGTTTGCGTTGGTCCGGT AGTTTGGAAGGAAATTAACAAGAAGAATGGAGGTGGGTTTTGCGGTGGATCTAAGGTAAAAAGTGCAGGACAAATGGGGAAGAACTCTACTAAAATGGGG TACAAGGAAGGTTCAGAGAAAGCTAGTAGTAGTAAAAGGGGTCGTCCTACAAGAGAATCCAAGAGTTCTGTTCAAGATACCATCAAAGAAAGGAAAAGTT CAGTTTCCAAGCACAGGAAGAAATGCAAAGCAGCTTTGGATCCCATTCATTGTAAGATGTTACCTGAAAAAGTGGAAGATGTTGCTGAGCATATTGGTTC AACCAAGCAACGTAATGAAGTGACTATGAACTCTCAGATTGTGGTCAAAGAAGAATATCCAACGTGTTCAGGATCCGAGTCGGATGTGGTTGAACTTGAT GCTTCTATGCTCCCTCTTGGAGATAGCAATCCATTTTTCCTTGAAGAATGTCGTGAAGTAATTGACACATACGATGTATATGATCATGCTATCACGAACA GCAATTCGGAGTTCAGATTGAAGCTGATGGAGGTTCTCAGACAACCATACAGCGACAAGGAGTATAACGAACTATTGAACCAAGTGTCTCGAGCAAGATA G
AA sequence Show only first row Show all	>Lus10038311 pacid=23158145 polypeptide=Lus10038311 locus=Lus10038311.g ID=Lus10038311.BGIv1.0 annot-version=v1.0 MSFRSSTGKDVGLMLEAEDPWVIKRKGRWVRESPDLYAQPHEDATKLHVSAKQSVIEISSDDDDGNVRSLVECSDNRYEMFLASMKPQGTSSFLDCCPNG GRIRKGGKDRNFQGTKERNIKAKDRQKCEVALNPITCKQFPDKGKREMDICNPVSQKRSGGVCVGPVVWKEINKKNGGGFCGGSKVKSAGQMGKNSTKMG YKEGSEKASSSKRGRPTRESKSSVQDTIKERKSSVSKHRKKCKAALDPIHCKMLPEKVEDVAEHIGSTKQRNEVTMNSQIVVKEEYPTCSGSESDVVELD ASMLPLGDSNPFFLEECREVIDTYDVYDHAITNSNSEFRLKLMEVLRQPYSDKEYNELLNQVSRAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77270			unknown protein		Lus10038311 [exp]	0	1
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	1.4	0.9273
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10027350 [exp]	3.0	0.9297
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10043178 [exp]	3.0	0.9203
AT5G11350			DNAse I-like superfamily prote...		Lus10013119 [exp]	3.2	0.9030
AT1G18450		ATARP4	actin-related protein 4 (.1)		Lus10042980 [exp]	7.3	0.9067
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10019757 [exp]	8.9	0.9168
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10005023 [exp]	10.4	0.9200
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	11.0	0.9018
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	12.4	0.8831
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Lus10014915 [exp]	12.7	0.9157

Compare expression of checked genes

Lus10038311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.