Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 202 / 5e-63 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 181 / 1e-54 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 177 / 2e-53 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 171 / 3e-50 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 155 / 6e-45 ATSEH soluble epoxide hydrolase (.1) AT2G26750 151 / 3e-43 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 147 / 5e-42 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G12830 61 / 3e-10 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 50 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52510 49 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036177 [exp] 617 / 0 AT4G02340 203 / 3e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 454 / 5e-162 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10001210 [exp] 379 / 2e-132 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10039814 [exp] 370 / 5e-129 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 368 / 7e-128 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10011202 [exp] 364 / 1e-126 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 341 / 2e-117 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 205 / 5e-64 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 202 / 5e-63 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G134800 [exp] 393 / 6e-138 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 393 / 8e-138 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 369 / 1e-128 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 328 / 1e-112 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 202 / 5e-63 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 200 / 4e-62 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 188 / 2e-57 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 175 / 4e-52 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 169 / 3e-50 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 160 / 1e-46 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10038312 pacid=23158429 polypeptide=Lus10038312 locus=Lus10038312.g ID=Lus10038312.BGIv1.0 annot-version=v1.0 ATGGAGAAGATTCAGCACAAATTCGTGGAAGTCGAAGCGGGGTTGAAGCTCCATGTAGCTGACATTGGATCAGGTGATAAAGCCGTCCTCTTTCTACACG GATTCCCCGAAATCTGGTACTCATGGCGGTACCAGATGCTGGCATTGTCGAGTTCCGGCCACCGAGCAATAGCCGTTGATTATAGAGGATTCGGGTTGTC GGATCACCCGCTCAAGGTCGAAGACGCCAACTACGTCAACATTGTGGCTGACCTTGTCGCCATCCTCGATTCCCTCGCCATTCCTAAGGTGGTGCTTATA GGGAAAGACTGGGGAGCATTTGTGGCTTCATGGTTCGGGGTCCTTCACCCGGACAGGGTATCCGGGATAGTGACACTGGGGATTCCGTTGGCCATCCCGG GGAGTTTCCTTGCTGGGTTTACTGTGCCGGAAGGTGTCTATACCTCACGATGGGGGGAACCAGGTCGAGCAGAAGTAGATTTCGGTAGGCTAGATGCTAA GACGGTGATACGGAATGTGTACATACTCTTTTCGGGGAGTGATATGCCAACTGCTGCCGAGAACCAGGAGATCATGGATTTGGTGGATCCAGCAACTCCA CTTCCATCCTGGTTCTCCGACAAAGATCTCTCGGCTTATGGTGCCTTGTATCAGAAGTCAGGGTTTCAGTTTGCCCTCCAAATCCCCTACAGATCGTTCC AACTGAAGCTGGACATGCCGAAAACAGAGCAAAAGCTTAACATGCCGGCTTTATTGATCATGGGAGCCAAAGATTACTGCCTGAAATTTCCAGGAATTGA AGATTACATCCACAACGATGCTTCTATGAAGGAGTTCGTTCCCGATTTGAAGACCGTGTTCATGGACGAAGGAAACCATTTCGTCCAAGAACAACTCCCC GAACAAGTGAATCACCTTATCCTCGGATTCCTCGAAGCTCGAATCTCGCCATGA
AA sequence Show only first row Show all	>Lus10038312 pacid=23158429 polypeptide=Lus10038312 locus=Lus10038312.g ID=Lus10038312.BGIv1.0 annot-version=v1.0 MEKIQHKFVEVEAGLKLHVADIGSGDKAVLFLHGFPEIWYSWRYQMLALSSSGHRAIAVDYRGFGLSDHPLKVEDANYVNIVADLVAILDSLAIPKVVLI GKDWGAFVASWFGVLHPDRVSGIVTLGIPLAIPGSFLAGFTVPEGVYTSRWGEPGRAEVDFGRLDAKTVIRNVYILFSGSDMPTAAENQEIMDLVDPATP LPSWFSDKDLSAYGALYQKSGFQFALQIPYRSFQLKLDMPKTEQKLNMPALLIMGAKDYCLKFPGIEDYIHNDASMKEFVPDLKTVFMDEGNHFVQEQLP EQVNHLILGFLEARISP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	0	1
AT5G02070			Protein kinase family protein ...		Lus10020667 [exp]	1.0	0.9499
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	4.0	0.8638
					Lus10021739 [exp]	4.9	0.9415
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10035402 [exp]	5.5	0.8725
					Lus10004437 [exp]	6.0	0.9415
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	6.9	0.9415
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	7.7	0.9415
					Lus10039674 [exp]	8.5	0.9415
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	8.9	0.8195
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	9.2	0.9415

Compare expression of checked genes

Lus10038312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.