Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58770 303 / 6e-103 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58782 246 / 5e-81 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58784 246 / 7e-81 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58780 235 / 2e-76 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23410 232 / 4e-75 ACPT cis-prenyltransferase (.1) AT2G23400 195 / 1e-61 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G17570 142 / 1e-40 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60510 115 / 2e-30 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60500 112 / 4e-29 Undecaprenyl pyrophosphate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036178 [exp] 504 / 0 AT5G58770 357 / 7e-123 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10032757 [exp] 126 / 2e-34 AT2G17570 344 / 1e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10002788 [exp] 126 / 2e-34 AT2G17570 342 / 9e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10005789 [exp] 124 / 4e-33 AT2G17570 316 / 2e-107 Undecaprenyl pyrophosphate synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045500 [exp] 336 / 4e-116 AT5G58770 325 / 1e-111 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G250900 [exp] 323 / 6e-111 AT5G58770 313 / 1e-106 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G312700 [exp] 315 / 8e-108 AT5G58770 294 / 2e-99 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.005G100800 [exp] 90 / 2e-20 AT2G17570 243 / 2e-78 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.002G039400 [exp] 77 / 2e-16 AT2G17570 259 / 1e-86 Undecaprenyl pyrophosphate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01255 [flax] [poplar] Prenyltransf Putative undecaprenyl diphosphate synthase
Representative CDS sequence Show only first row Show all	>Lus10038313 pacid=23158401 polypeptide=Lus10038313 locus=Lus10038313.g ID=Lus10038313.BGIv1.0 annot-version=v1.0 ATGCTCTCCCTACACTACTTCCCCAACCGAATCCCTGAACAGAAATGTCCTACTGCGGCGGCGGCATCATCCGGCCAGCTTCAGCGGCGGCGAGTGGTGG CGAAAGCGTGGCAGTTGGAGAAGAGGAAGAAGAACAAGAAGGAGCTTCCGGAAGGGCTGAGGGAAGATCTGATTCCTAGACACGTGGCGGTGATAATGGA CGGTAACGGCAGGTGGGCGAAGCAGAGAGGGCTTGTCGCCGGAGCAGGACATGAGGCTGGAGTACGGTCGTTGAAGGAGATGGTGCGGCTTTGCATTCAG TGGGGGATTAGTGTTTTAACAGTGTTTGCTTTCTCCACCGATAACTGGATTCGGCCTAAGGTGGAGGTTGATTTTTTGATGAGTTTGTTCGAAAGAGCGC TTAGAACTGAGTTGGAAGATATTGTAAGGCAAGGAGTGCGCATCTCAGTGATAGGAGACTCGTCAAAGCTCTCGGATTCCTTACTCGACCTCATACACGA CGTGGAGGAGAGGACCAAGAACAACTCCAACCTCCACCTCATGGTGGCCGTAAGCTACAGCGGCAAATACGACGTCGTGCAGGCATGCCAGAGCATCGCC TGTCAGGTGAAAGACGGGGTCATAGAACTCGACGACATAAACGAGAGCTTGATCGAGAAGGAGTTGGAGACCAAGCGCACAAAGTTCCCTAGCCCGGACC TTTTGATTCGGACCAGTGGAGAGCTCAGGATCAGTAACTTCCTGTTGTGGCAGCTGGCTTACACCGAGCTCTACTTCGCCGAACCACTCTGGCCTGATTT CGGCGAGACAGAGTTCGCCCAGGCCTTGCTTTCGTTCCAGCAGAGGCAGCGCCGGTTCGGTTCCAGGAAGTGA
AA sequence Show only first row Show all	>Lus10038313 pacid=23158401 polypeptide=Lus10038313 locus=Lus10038313.g ID=Lus10038313.BGIv1.0 annot-version=v1.0 MLSLHYFPNRIPEQKCPTAAAASSGQLQRRRVVAKAWQLEKRKKNKKELPEGLREDLIPRHVAVIMDGNGRWAKQRGLVAGAGHEAGVRSLKEMVRLCIQ WGISVLTVFAFSTDNWIRPKVEVDFLMSLFERALRTELEDIVRQGVRISVIGDSSKLSDSLLDLIHDVEERTKNNSNLHLMVAVSYSGKYDVVQACQSIA CQVKDGVIELDDINESLIEKELETKRTKFPSPDLLIRTSGELRISNFLLWQLAYTELYFAEPLWPDFGETEFAQALLSFQQRQRRFGSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	0	1
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	1.4	0.9179
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	1.4	0.9170
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	3.0	0.9154
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015994 [exp]	7.7	0.8618
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	8.0	0.9048
AT4G32480			Protein of unknown function (D...		Lus10041046 [exp]	8.5	0.8904
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10017089 [exp]	9.4	0.8768
AT5G55980			serine-rich protein-related (....		Lus10043215 [exp]	9.8	0.8164
AT2G15020			unknown protein		Lus10026592 [exp]	13.0	0.8773
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	13.2	0.8975

Compare expression of checked genes

Lus10038313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.