Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58760 724 / 0 DDB2 damaged DNA binding 2 (.1) AT1G80710 71 / 1e-12 DRS1 DROUGHT SENSITIVE 1 (.1) AT2G16780 49 / 5e-06 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT2G32700 49 / 1e-05 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT4G35050 44 / 0.0003 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT1G10580 43 / 0.0005 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 43 / 0.0005 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT2G47990 43 / 0.0007 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036179 [exp] 934 / 0 AT5G58760 776 / 0.0 damaged DNA binding 2 (.1) Lus10006725 [exp] 64 / 3e-12 ND / Lus10036319 [exp] 67 / 3e-11 AT1G80710 415 / 5e-139 DROUGHT SENSITIVE 1 (.1) Lus10004167 [exp] 53 / 5e-07 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 52 / 8e-07 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039578 [exp] 47 / 6e-05 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005323 [exp] 45 / 0.0001 AT3G63460 885 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10027848 [exp] 45 / 0.0002 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 43 / 0.0005 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G251000 [exp] 789 / 0 AT5G58760 774 / 0.0 damaged DNA binding 2 (.1) Potri.018G112500 [exp] 73 / 2e-13 AT1G80710 512 / 1e-178 DROUGHT SENSITIVE 1 (.1) Potri.002G213500 [exp] 49 / 8e-06 AT2G47990 587 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.006G045800 [exp] 45 / 9e-05 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.010G064600 [exp] 45 / 0.0001 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G135600 [exp] 44 / 0.0003 AT2G47990 614 / 0.0 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) Potri.018G033300 [exp] 44 / 0.0005 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.019G096900 [exp] 43 / 0.0006 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G002100 [exp] 42 / 0.0008 AT4G29860 523 / 0.0 TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10038314 pacid=23158249 polypeptide=Lus10038314 locus=Lus10038314.g ID=Lus10038314.BGIv1.0 annot-version=v1.0 ATGGCCCCGCAGAGGAGGCGGACGGCGTTCCCTAAAGTGGTGATCGAGAGAGACACAGAGTCTGAGCAGAGCACTTCTTCTTCCGACGAGGACGACAGTG GAGAAGACAACAAAGGCTCCGATTCCGAAGAAGAAATGGCGGAAGAGAAGGTTGAAGAAGAGGACGCGAATGAGAGGAAGAAGAATCAGAAAGGGAAGGC GCCGATTATCACCATCAGTTTGAAGAAAGTCTGCAAAGTTTGCAAGAAGTCAGGTCATGAAGCGGGTTTTAAAGGAGCGACCTACATTGATTGCCCCATG AAACCATGTTTCCTCTGTAAATTGCCCGGGCATACTACAATGAGTTGTCCACATAGGGTGGCTATTGAGCATGGAGTTGTTCCAGCACCCCGTAGGAGTA TCCATAGCCCTTTAGATTACGTTTTCCAACGCCAGATTATGCCAAAGATCCCTCCTGTAGTGTCTAATGTCTTACCCTCTAACTGCGGTTTGTTTCTCTA TTTGGAACAGATAAAGCCTTCATATGTGATACCAAATCAAGTAAGTTGTGCTGTCATCAGATATCATAGCAGGAGGGTGACATGTTTGGAGTTCCATCCT ACCAAGAACAATATCCTTTTATCCGGGGACAAGAAAGGACAAGTTGGAATCTGGGACTTTGAGAAGGTGCATGAGAAGATGGTGTATGGAAATATACACA CTTGTATTGTCAATAACATGAGGTTCAATCCGGTGAATGATGGTACCATATATGCTGCATCCTCTGATGGAACCATCAGTTGCATTGACTTGGAGACTGG GCTCTCATCATCTCTAATGAACCTCAATCCAAATGGCTGGCAGGGCTCCAACAGTTGGAGAATGCTCTATGGCATGGATATGAACTCAGAGAAAAGAGTT GTGCTTGTTGCTGATAACTTTGGGTTTCTCTATATGGTGGATACACGGTCCAACCACAAAACCGGGGATGCAATTATGATACACAAAAAGGGTAGCAAAG TAGTTGGCCTGCACTGCAATCCTGTCCACCCGGAGCTTCTCTTGAGTTGCGGCAATGATCATTTTGCACGCATATGGGATATGCGTAGGCTAGAAGCTGG ATCTTCTCTTTACGATCTTCCTCACAAGCGTGTTGTGAATTCTGCATATTTCTCTCCCACGACTGGCTGCAAAATTCTGACAACTGCACAAGACAATCGA CTCCGGGTGTGGGACTCTATCTTTGGGGATCTAGAATCTCCTAGCCGAGAAATCGTACACAGTCATGATTTCAACAGGCATCTCACGCCATTCCGAGCAG AATGGGATCCAAAGGATCCAACCGAGTCCCTTGCAGTTGTTGGCCGTTACATAAGTGAGAATTTCAATGGTGCGGCTCTGCATCCCATCGATTTCATAGA CACCAGCAATGGACAACTTGTTGCTGAGGTGATGGATCCAAACATCACCACAATTAGTCCCGTGAACAAGCTACATCCTAGAGACGATGTTTTGGCATCC GGAAGCTCGAGGTCTCTTTTCATATGGAGGCCGAGTTGGAGTCCCGAAGTGGATGAACAGAAGGAGGAGAGGAGGATTCTCATATGTGGAAACGATGAGA AAAGACGGAAGAAGAAATCGGGAAATGATAGTGACGTGGAAGATGATGACTTGGATGGTGGGTTCAAATCCAAGGGCAAGAAGAAACAGAGCTTAAAGCT CAAAGTTACTGCATCAAAATCAGCTCCACCTGGCCGGAAGGTTAAGCATTAA
AA sequence Show only first row Show all	>Lus10038314 pacid=23158249 polypeptide=Lus10038314 locus=Lus10038314.g ID=Lus10038314.BGIv1.0 annot-version=v1.0 MAPQRRRTAFPKVVIERDTESEQSTSSSDEDDSGEDNKGSDSEEEMAEEKVEEEDANERKKNQKGKAPIITISLKKVCKVCKKSGHEAGFKGATYIDCPM KPCFLCKLPGHTTMSCPHRVAIEHGVVPAPRRSIHSPLDYVFQRQIMPKIPPVVSNVLPSNCGLFLYLEQIKPSYVIPNQVSCAVIRYHSRRVTCLEFHP TKNNILLSGDKKGQVGIWDFEKVHEKMVYGNIHTCIVNNMRFNPVNDGTIYAASSDGTISCIDLETGLSSSLMNLNPNGWQGSNSWRMLYGMDMNSEKRV VLVADNFGFLYMVDTRSNHKTGDAIMIHKKGSKVVGLHCNPVHPELLLSCGNDHFARIWDMRRLEAGSSLYDLPHKRVVNSAYFSPTTGCKILTTAQDNR LRVWDSIFGDLESPSREIVHSHDFNRHLTPFRAEWDPKDPTESLAVVGRYISENFNGAALHPIDFIDTSNGQLVAEVMDPNITTISPVNKLHPRDDVLAS GSSRSLFIWRPSWSPEVDEQKEERRILICGNDEKRRKKKSGNDSDVEDDDLDGGFKSKGKKKQSLKLKVTASKSAPPGRKVKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10038314 [exp]	0	1
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Lus10036179 [exp]	5.0	0.8417
AT3G20060		UBC19	ubiquitin-conjugating enzyme19...		Lus10019034 [exp]	6.8	0.8515
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	12.4	0.8630
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10027388 [exp]	24.8	0.8208
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	30.7	0.8162
AT1G78560			Sodium Bile acid symporter fam...		Lus10035803 [exp]	33.2	0.7493
AT1G32580			plastid developmental protein ...		Lus10023744 [exp]	41.0	0.8179
AT2G42520			P-loop containing nucleoside t...		Lus10000848 [exp]	47.9	0.7945
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	50.8	0.8261
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	50.8	0.7728

Compare expression of checked genes

Lus10038314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.