Plant FIBer expression Database

Lus10038315 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G29960 288 / 1e-99 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
AT5G58710 280 / 2e-96 ROC7 rotamase CYP 7 (.1)
AT3G55920 254 / 8e-86 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
AT2G21130 209 / 4e-69 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
AT4G38740 209 / 7e-69 ROC1 rotamase CYP 1 (.1)
AT2G16600 202 / 4e-66 ROC3 rotamase CYP 3 (.1.2)
AT3G56070 201 / 6e-66 ROC2 rotamase cyclophilin 2 (.1.2)
AT3G62030 204 / 1e-65 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3)
AT4G34960 199 / 2e-64 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
AT5G13120 196 / 1e-62 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036180
[exp]
385 / 3e-137 AT2G29960 300 / 3e-104 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
Lus10018238
[exp]
317 / 4e-111 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
Lus10040666
[exp]
317 / 8e-111 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1)
Lus10014846
[exp]
255 / 2e-85 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
Lus10030408
[exp]
252 / 7e-84 AT3G55920 333 / 5e-116 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Lus10007579
[exp]
209 / 5e-69 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2)
Lus10022012
[exp]
208 / 2e-68 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2)
Lus10012167
[exp]
204 / 4e-67 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2)
Lus10042553
[exp]
203 / 1e-66 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G046500
[exp]
311 / 1e-108 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2)
Potri.001G251700
[exp]
281 / 6e-97 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1)
Potri.010G189000
[exp]
279 / 1e-95 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Potri.009G130100
[exp]
210 / 2e-69 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Potri.009G132800
[exp]
211 / 9e-69 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Potri.002G021500
[exp]
207 / 2e-68 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2)
Potri.004G168800
[exp]
205 / 2e-67 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2)
Potri.004G173500
[exp]
205 / 1e-66 AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Potri.019G014396
[exp]
203 / 1e-66 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2)
Potri.005G240200
[exp]
202 / 2e-66 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0475 Cyclophil-like PF00160 Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence
>Lus10038315 pacid=23158212 polypeptide=Lus10038315 locus=Lus10038315.g ID=Lus10038315.BGIv1.0 annot-version=v1.0
ATGCGGAGCTCGAAATCTCTGTCGATTGCTCTACTATGGAGCGTGATGCTGTTTGGAACCCTGTCGCTCATCCAGGCGGCTTTGCAACCCGAGCAAAATT
TGGAAGAGATCACAAACAAAGTTTATTTTGATGTTGAGATCAACGGCAAGCCCGCCGGTCGTATTACCATGGGTCTCTTTGGCAAGGCAGTTCCTAAAAC
AGCAGAGAATTTCAGAGCATTGTGCACCGGTAAGCATCACGAACTGGTCCAGAAGCTTACAATTTGGGACTGGTTGTCTAACCATCAGTCCGGTGAGAAA
GGCACGGGGAAGAGTGGGAAACTTCTAACCTACAAGGGTAGCTCATTCCACAGGATCATACCTAGCTTTATGATCCAAGGAGGTGACTTCACCCATGGCG
ACGGACGAGGTGGAGAATCCATCTATGGTGAGAAATTTGCTGACGAGAACTTCAAGTTGAAGCACACTGGCCCTGGGATTCTATCAATGGCTAATGCCGG
TCGAGACACCAACGGTTCACAATTCTTTATCACAACCGTCGAAACTAGCTGGCTGGATGGGAAACACGTAGTATTCGGGAAGGTGATAGCAGGAATGGAC
GTAGTGTACAAGGTTGAGAGTGAAGGAACCCGAGAAGGGACACCTAAGACCAAGGTAGTCATTGCAGACTCTGGTGAGTTGCCTCTCTAA
AA sequence
>Lus10038315 pacid=23158212 polypeptide=Lus10038315 locus=Lus10038315.g ID=Lus10038315.BGIv1.0 annot-version=v1.0
MRSSKSLSIALLWSVMLFGTLSLIQAALQPEQNLEEITNKVYFDVEINGKPAGRITMGLFGKAVPKTAENFRALCTGKHHELVQKLTIWDWLSNHQSGEK
GTGKSGKLLTYKGSSFHRIIPSFMIQGGDFTHGDGRGGESIYGEKFADENFKLKHTGPGILSMANAGRDTNGSQFFITTVETSWLDGKHVVFGKVIAGMD
VVYKVESEGTREGTPKTKVVIADSGELPL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G29960 CYP19-4, ATCYP5... CYCLOPHILIN 19-4, ARABIDOPSIS ... Lus10038315
[exp]
0 1

Lus10038315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.