Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01410 523 / 0 PDX1, ATPDX1.3, RSR4 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) AT2G38230 492 / 3e-177 ATPDX1.1 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.1, pyridoxine biosynthesis 1.1 (.1) AT3G16050 362 / 6e-126 A37, ATPDX1.2 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) AT2G38210 125 / 3e-36 PDX1L4 putative PDX1-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036181 [exp] 567 / 0 AT5G01410 566 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10004812 [exp] 530 / 0 AT5G01410 592 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10002486 [exp] 343 / 7e-120 AT5G01410 395 / 1e-140 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10011450 [exp] 294 / 5e-100 AT3G16050 372 / 9e-131 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) Lus10037545 [exp] 286 / 5e-97 AT3G16050 370 / 5e-130 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100500 [exp] 523 / 0 AT5G01410 538 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Potri.016G116400 [exp] 520 / 0 AT5G01410 532 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Potri.001G182100 [exp] 380 / 3e-133 AT3G16050 483 / 9e-174 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01680 [flax] [poplar] SOR_SNZ SOR/SNZ family
Representative CDS sequence Show only first row Show all	>Lus10038318 pacid=23158433 polypeptide=Lus10038318 locus=Lus10038318.g ID=Lus10038318.BGIv1.0 annot-version=v1.0 ATGGCGGACAGCGGCGTAGTCACCGTCTACGGAAACGCCGCCCTCTACGAACCAACGACGAAGAAATCAACCTTCTCCGTCAAGGTCGGCCTCGCCCAAA TGCTCCGCGGCGGCGTCATCATGGACGTCGTCAACGCCGACCAAGCCAGGATCGCCGAGGAGGCCGGCGCCTGCGCCGTCATGGCTCTTGAGCGAGTCCC TGCCGACATCCGCTCCCAGGGAGGCGTAGCCAGGATGAGCGATCCTCAATTGATCAAGGAAATCAAGCAATCCGTCACCATCCCCGTCATGGCCAAGGCC CGAATCGGCCATTTCGTCGAGGCTCAGATCCTGGAAGCGCTCGGAATCGACTACATTGATGAGAGCGAGGTCCTGACCCTAGCTGACGAGGACAACCACA TCAACAAGCACAATTTCCGAATCCCGTTCGTCTGCGGATGCAGGAACCTGGGGGAAGCCCTGCGGCGGATCCGCGAAGGCGCGGCGATGATCAGGACCAA AGGAGAGGCCGGAACTGGAAACGTGATTGAAGCCGTGAGGCATGTGAGGTCTGTGATGGGGGACATTAGGGTTCTGAGGAACATGGATGATGATGAGGTG TTCACTTTCGCTAAGAAGATTGCTGCGCCTTACGATCTGGTGATGCAGACCAAACAGCTCGGGAGGCTTCCGGTGGTCCAATTCGCCGCTGGAGGAGTGG CGACTCCGGCCGATGCGGCGATGATGATGCAGCTGGGTTGCGACGGTGTGTTCGTCGGATCTGGGGTTTTCAAGAGTGGTGACCCGGCGAGGAGGGCGAG GGCAATCGTGCAGGCGGTTACTCATTACACTGATCCCGAAGTGCTTGCTGAGGTGAGTTGTGGATTGGGTGAGGCTATGGTAGGGATCAATCTGAACGAT CCGAATGTCGAGAGGTATGCTAATCGATCGGAGTAA
AA sequence Show only first row Show all	>Lus10038318 pacid=23158433 polypeptide=Lus10038318 locus=Lus10038318.g ID=Lus10038318.BGIv1.0 annot-version=v1.0 MADSGVVTVYGNAALYEPTTKKSTFSVKVGLAQMLRGGVIMDVVNADQARIAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKA RIGHFVEAQILEALGIDYIDESEVLTLADEDNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRHVRSVMGDIRVLRNMDDDEV FTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYTDPEVLAEVSCGLGEAMVGINLND PNVERYANRSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	0	1
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	1.4	0.9322
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10037423 [exp]	1.7	0.9316
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	2.8	0.9324
AT3G18420			Protein prenylyltransferase su...		Lus10031923 [exp]	3.3	0.9168
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	4.0	0.8992
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	5.0	0.9282
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	5.3	0.9232
AT2G18840			Integral membrane Yip1 family ...		Lus10006966 [exp]	5.5	0.9237
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	6.0	0.9309
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10029770 [exp]	7.3	0.9183

Compare expression of checked genes

Lus10038318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.