Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29970 530 / 3e-172 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 513 / 5e-166 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G40130 225 / 5e-64 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G57710 166 / 1e-41 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 144 / 5e-35 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 88 / 2e-17 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 84 / 3e-16 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 82 / 2e-15 Clp amino terminal domain-containing protein (.1) AT3G48870 63 / 9e-10 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G50920 63 / 1e-09 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036183 [exp] 1477 / 0 AT2G29970 566 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040206 [exp] 259 / 1e-71 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028281 [exp] 224 / 8e-61 AT1G07200 407 / 3e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019984 [exp] 145 / 3e-35 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 144 / 1e-34 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008902 [exp] 137 / 5e-33 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 122 / 4e-28 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 95 / 1e-19 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016966 [exp] 91 / 2e-18 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G046700 [exp] 387 / 4e-117 AT2G29970 658 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G252500 [exp] 372 / 2e-111 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 298 / 3e-85 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G069100 [exp] 296 / 2e-84 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 141 / 7e-34 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 140 / 1e-33 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G073800 [exp] 117 / 1e-26 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 100 / 3e-21 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.016G071800 [exp] 94 / 2e-19 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 94 / 3e-19 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Lus10038320 pacid=23158282 polypeptide=Lus10038320 locus=Lus10038320.g ID=Lus10038320.BGIv1.0 annot-version=v1.0 ATGCCATCGCCGGTGACCACAGCCAGGCAATGTTTAACCGACGAAGCTGCCCGCGCCCTAGACGACGCCGTAGCCGTCGCCCGTCGCCGGAGCCACTCCC AAACCACTTCCCTCCACGCCGTCTCAGCACTCCTCGCTCTCCCTTCCTCTTCCCTCCGTGACGCCTGCTTCCGATCCCGAATTTCCTCCTCCGATTACCC TCCTCCGCGCCTCCAGTTCCGTGCCCTCGAGCTCTGCGTCGGAGTCTCCCTCGACCGTCTTCCTTCCTCCAAATCCGCCGACGAGCCGCTGATTTCAAAC GCCCTCATGGCTGCAATCAAGAGATCTCAGGCAAATCAGCGCCGCCACCCGGATAGCTTCCACCTGCAGCAGATTCACTTCGGGAACCAGGCTCCCGCCG TGATTAAAGTGGAGCTTAAGCACTTCATCGGGTCGATTTTGGATGACCCGGTTGTCAGTCGGGTCTTCGGTGAAGCTGGATTTATCAGCTACCAGATCAA ATCCGTAATCCTCAGTCCACCTTTACTTCTTCAGACCCCGAGATTCCCTCGGTCTGGATTGCTCCCGCCCTCCTTCTTTTCACGGAATCTCGGCGCTTCG GATCCCGGGTTCGGATTCGGGTTCTCGTTTTCCGACGACGGTGCTGAGAATTCCCGGAGAATCGGGGAAGTGATGGTGAAACCAGAAGGGAAAGGGAAGA ATCCATTGCTCCTCGGTGCTTGTGCGAGCGACGCGCTCAAGAGATTCGTTGAGCGCGTGAAGAACAATAGTAAAGGCAACAGTAGCGGCGGCGGAGGAAG TTCGTTGCCAAGTGAAATCGCCGGAATATCCGTGGTTGTTATCGAATCCGACGAGGAGGAAACGGGTCAGAAGTTTGACAAGATGGGTCGGGCACTCGAA GCGTGTTCGGGTCGGGGAATCGTCGCTAGTTTCGGCGATTTGGAAGTTCTCATCGGCGGAGACGATGATGATACTGCTGGGAGCTACATGGTTTCCAAAT TGACGACCCTTCTGGAAATGTTCAAAGAGAAGCTTTGGCTGATCGGAGCTGCGGCGAGCTACGATGTATACAGCAAGTTCTTGAAGCGGTTTCCCGCTGT TGAAAAAGATTGGGATCTCCAGCTCTTGCCCATTACTTCTTCTTCCAGTCCCGTTTCTGGATTTGGCTCCAAATCCAGCTTATTGGGATCTTTCGTTCCA TTTGGTGGGTTTTTTCCAACGACAACATCTGATTTGCCAAGTCCATTAAGCAGCAGCAGTATGAGTGAGCCACTCGGTCGTTGCCATCTTTGCACAGCCA AGTATGAGCAAGAAGTTGCGGCTCTTCTCAAGACTGCAAACCAACGCTCAGATAACTTGCCTTGGTTAACAATGGCGGAACAGAATAAAGGCAAAGGGGT TGATGATGCATCAAAGATTGAAGATGATGGCTCTATTGTGGCGCTAAAGAAGAAATGGAATGATATATGTCAACGACTTCATCGTTCTCAGACATTCTCC AAATTGGATACCTCTCCCAGTCCTAAGTACCAGGCCTTAGTAGCTGAAGATTCATCCACAAGTATTGGAGTTTTCAACGGAATTCAAAATCTATTCGGGG CGAAAAGACAAATGGCAGTAGTTTCTGAATCCAAGAATCTTGAGGTAGTGGAAGAAGAAGAAGGAGGAGGAAGAGGGTCCACAATGCAGGTTCAGGCTGC ACCTTGTTCATCCTCATCTGTGAGCTCCGTCACTACTGATTTAGGATTGGGGACATTATACTCAACGAAATTTCTTGAGCACAAGGAGCAATGTGATCAC TTATCCTCTACGAATTCCACCACCGAACCCGATGCAGCTAGTGATGTCGTTTCTCGACAGATCGTCAAAGCTTCTCCTCCCTCAAGAGTGCCATTGGACT TAGCTGACTATAAAAGACTGAGGACATTGCTATCCAGCAAGGTTAGTTGGCAAGATTCAGCTATATCTGCTATATGTCAGTCTTTATCGAAGGCTAAATT TGGCTCCAAGTCTAGGAACGATATTTGGCTAACTTTTCTTGGACCTGACAAGATTGGGAAGAAGAAAATAGCTTCTGCATTGGCTGAAATTGTGTCCGGC AGCAATGAAAATGTTATCTTTGTCGATCTGAGCTACCAACACGGGGCTGGATCATCGAATTCGGTGTATCAGTATCGAGAATTTTACGACGATGTAAATT TCAGAGGGAAGACGGTCATTGATTACATTACTGCAGAGATGAAGAAGAAACCTCGCTCGGTGACCTTCCTTGAAAATGTAGAGCAGGCTGATCTTCTGAC TAGGGCTAGCTTATCCCAGGCGGTATCGAAGGGTAAATTTGCAGACTCGTACGGGAGAGAAATCAGCACCAGCAACGTGATTTTCATCACTACAACATCA GCCATGGTGGGGGATACAGATCTTTCGCATGAGAACAAAACTGTCAAGTACACCGAGGAATCGATACTTGGAGCTAAGAGGTGGCAGATGCAACTGCAGG TCGAACCGGTTTCTCAAAGTTTAGGTATAACAATAAGCAATGTGATCAAAGTTAAGGGTCAGGGAAAAACTTCCCCCGGTTCATCGATGAATAAGAGAAG AAAGCTACAAGAAAGCAACGAATCGAAGAAACGAGGCTTTCTGGACTTAAACCTTCCGGTGGAGGAGGCAGAAGAGGAGGATTCGGACGGTGGAGAGTGG ATGCAAGACTTTTTTGAGCAAGTTGACGAGAAAATAGAGTTGAAGCCATTCGACTTTGACGCTCTGGGGGAGAAGATAGTGAAAGCAATCAGCTTTCAGA TACAGAAAGTGTTTGGTGGGGCAGAGAAGGTAATGGTGGAGATAGAGAATGATGCCATGGTACAAATGATTGCAGCTTCTTGGTCATCGGAGAAGGAGGA AGCCACAGCGAAATGGGTTGAGAATGTTTTGGGGAGAGGATTTTCGGAGCTTCGGTATAAGTACAGCATCAGTAATGCTAATAACGTACCGTGTGCTATC AAGTTACAGAGTTGTGTTGGTATCTTGGCAGAAGAGCTAGCTCCTGGAATTTGCCTGCCCTCGAGAATCACCCTATGA
AA sequence Show only first row Show all	>Lus10038320 pacid=23158282 polypeptide=Lus10038320 locus=Lus10038320.g ID=Lus10038320.BGIv1.0 annot-version=v1.0 MPSPVTTARQCLTDEAARALDDAVAVARRRSHSQTTSLHAVSALLALPSSSLRDACFRSRISSSDYPPPRLQFRALELCVGVSLDRLPSSKSADEPLISN ALMAAIKRSQANQRRHPDSFHLQQIHFGNQAPAVIKVELKHFIGSILDDPVVSRVFGEAGFISYQIKSVILSPPLLLQTPRFPRSGLLPPSFFSRNLGAS DPGFGFGFSFSDDGAENSRRIGEVMVKPEGKGKNPLLLGACASDALKRFVERVKNNSKGNSSGGGGSSLPSEIAGISVVVIESDEEETGQKFDKMGRALE ACSGRGIVASFGDLEVLIGGDDDDTAGSYMVSKLTTLLEMFKEKLWLIGAAASYDVYSKFLKRFPAVEKDWDLQLLPITSSSSPVSGFGSKSSLLGSFVP FGGFFPTTTSDLPSPLSSSSMSEPLGRCHLCTAKYEQEVAALLKTANQRSDNLPWLTMAEQNKGKGVDDASKIEDDGSIVALKKKWNDICQRLHRSQTFS KLDTSPSPKYQALVAEDSSTSIGVFNGIQNLFGAKRQMAVVSESKNLEVVEEEEGGGRGSTMQVQAAPCSSSSVSSVTTDLGLGTLYSTKFLEHKEQCDH LSSTNSTTEPDAASDVVSRQIVKASPPSRVPLDLADYKRLRTLLSSKVSWQDSAISAICQSLSKAKFGSKSRNDIWLTFLGPDKIGKKKIASALAEIVSG SNENVIFVDLSYQHGAGSSNSVYQYREFYDDVNFRGKTVIDYITAEMKKKPRSVTFLENVEQADLLTRASLSQAVSKGKFADSYGREISTSNVIFITTTS AMVGDTDLSHENKTVKYTEESILGAKRWQMQLQVEPVSQSLGITISNVIKVKGQGKTSPGSSMNKRRKLQESNESKKRGFLDLNLPVEEAEEEDSDGGEW MQDFFEQVDEKIELKPFDFDALGEKIVKAISFQIQKVFGGAEKVMVEIENDAMVQMIAASWSSEKEEATAKWVENVLGRGFSELRYKYSISNANNVPCAI KLQSCVGILAEELAPGICLPSRITL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	0	1
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	1.0	0.8909
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	4.2	0.8647
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	4.5	0.8785
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	4.9	0.8625
AT2G29970			Double Clp-N motif-containing ...		Lus10036183 [exp]	5.8	0.8397
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10039883 [exp]	9.4	0.8564
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033208 [exp]	9.6	0.8423
					Lus10027664 [exp]	9.9	0.8781
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10021707 [exp]	11.3	0.8733
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10018649 [exp]	13.7	0.8067

Compare expression of checked genes

Lus10038320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.